barSeed - Barley Seed Development Database

Probe CUST_31303_PI390587928

Source Contig U35_39331

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31303_PI390587928	Hv_44K_v2	GAGATGCCTGAGTTATTTCGGAGTACTATAGTGTATAGTCATTGGGTGATAAGTATTTAT	77	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.165	0.258	0.785	1.840	1.414	1.507
Raw	16.130	39.911	109.428	392.363	109.998	126.155

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18143.2	1380	2e-24	563 - 622	100	60 / 60	minus	ABC35422
MLOC	MLOC_18143.1	1279	2e-24	598 - 657	100	60 / 60	minus	ABC35422
JLOC1	JLOC1_12547.1	1270	8e-25	635 - 694	100	60 / 60	plus
Harvest21	ABC35422	204	3e-25	78 - 137	100	60 / 60	plus	ABC35422
Harvest35	U35_39331	204	3e-25	78 - 137	100	60 / 60	plus

Contig Sequence (204 bp)

>U35_39331 204 Hv_44K_v2
CCGGGGCTGCAGGTCTTGGTATGCGCTTGATGCTGCTCCTCCTTCTGTCGTTCCCCGGCT
TCTGTCGAAAGTGCACCGAGATGCCTGAGTTATTTCGGAGTACTATAGTGTATAGTCATT
GGGTGATAAGTATTTATTATTTTTTATTGAGTTGAATATTTATAGTATGCAAGGATATTT
ATGGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_39331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None