barSeed - Barley Seed Development Database

Probe CUST_31300_PI390587928

Source Contig U35_39336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31300_PI390587928	Hv_44K_v2	GTCTAAAGGCGTGTTGTTTCATATAACTGTATGCTATGTTGCCCATGCCTTTCCCGATAG	588	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356811	1417	2e-24	730 - 789	100	60 / 60	plus	ABC16930 ABC21092
MLOC	MLOC_30365.3	575	2e-24	513 - 572	100	60 / 60	plus	None
MLOC	MLOC_30365.6	751	2e-24	686 - 745	100	60 / 60	plus	None
MLOC	MLOC_30365.4	540	2e-24	478 - 537	100	60 / 60	plus	None
MLOC	MLOC_30365.5	690	2e-24	628 - 687	100	60 / 60	plus	None
MLOC	MLOC_30365.1	660	3e-22	605 - 660	100	56 / 56	plus	None
MLOC	MLOC_30365.2	556	3e-22	501 - 556	100	56 / 56	plus	None
MLOC	MLOC_65948.2	791	3e-21	298 - 357	97	58 / 60	plus	ABC21092
MLOC	MLOC_65948.1	875	3e-21	317 - 376	97	58 / 60	plus	ABC16930 ABC21092
JLOC1	JLOC1_20100.3	542	8e-25	473 - 532	100	60 / 60	plus
JLOC1	JLOC1_20100.2	571	8e-25	502 - 561	100	60 / 60	plus
JLOC1	JLOC1_20100.1	548	8e-25	479 - 538	100	60 / 60	plus
JLOC1	JLOC1_43436.1	484	2e-21	86 - 145	97	58 / 60	plus
Harvest21	ABC35433	651	3e-25	589 - 648	100	60 / 60	plus
Harvest35	U35_39336	651	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (651 bp)

>U35_39336 651 Hv_44K_v2
GAAAGCAGGAGGAAGTGTGCGTGACTATAGGTAGCCTCCTCGCTCAAGCAGGAACGACAG
CGGACATAGTCTTGGGAGGCGCCTCTTGCATTTGGGTTCCGTCCCGCACCGTTCTCGAGT
TAATGGAGAGATTCCTAACGTTGATAATGCAACCTTGGATCATGAAAGATTGTTGGAAAG
GTTGGGGACTTATGGTTTGGCCGAGTTTCACATAGAGGGAGATGGGAATTGTCAGTTTCG
AGCTTTGTCAGACCAAAATTTTCGCAATCCTGAATATCACAAACAAGTGAGGAAGGAAGT
CATGAAGCAGCTAAAGGAATTCAGAAAACGGTATGAAGGCTATGTACCGATGGAATATAA
GGTGTACTTGAAGAAAATGAAAAGATCCGGGGAATGGGGGGATCATTTGACCCTTCAAGC
GGGTGCAGACCGGGTAACATGCCACTTCTAGACATTTATCGGAGGGAGCTGAGTGACTTT
CTGGCGACTCCTATGTGAAGAGCTTTGTCTGTGAGTTCACTAGCAGCTTGAAACATTTAC
TCCTAGCTTAACTTAATTGGTTACCTTATGTTTTGTATATTAGGAAATGTCTAAAGGCGT
GTTGTTTCATATAACTGTATGCTATGTTGCCCATGCCTTTCCCGATAGCCT

Homology of Contig U35_39336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45850.3	176	1e-65	protein\|OTU-like cysteine protease family protein, putative, expressed
Brachypodium v1_2	Bradi1g32340.2	228	8e-68
Arabidopsis v10	AT3G02070.1	219	5e-51	Cysteine proteinases superfamily protein \| chr3:361368-363132 FORWARD LENGTH=219