barSeed - Barley Seed Development Database

Probe CUST_3129_PI390587928

Source Contig U35_6564

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3129_PI390587928	Hv_44K_v2	TGGAATGTTAGAATTTGGAAGGACTTATCCTGAGAGGAGCAATACGATAAGTCCATGGTG	1128	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.855	4.118	1.577	0.561	0.611	0.544
Raw	33.609	76.979	25.062	12.730	3.134	3.445

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10066.1	7377	7e-23	2850 - 2909	98	59 / 60	plus	ABC23347
MLOC	MLOC_10066.2	5461	7e-23	1041 - 1100	98	59 / 60	plus	ABC23347
JLOC1	JLOC1_6562.1	1201	4e-23	1042 - 1101	98	59 / 60	plus
Harvest35	U35_6564	1191	3e-25	1129 - 1188	100	60 / 60	plus

Contig Sequence (1191 bp)

>U35_6564 1191 Hv_44K_v2
CAGTCCATTCCAAGAAAAAGTCGACGCCACCTCACCACGGGGGACGCGCGGTCGCCCGTC
GCCGCCGGCCGCCGGCCGCGACCATGGCCCACGGCAAGCGCAGCGTCGCGGAGACCTTCT
CCAGCCTCCGGGAGCGCGGCAAGACGGCATTCATCCCATTCATCACCGCCGGTGACCCTG
ATTTGGCGACCACGTCGAAGGCGCTTAGGATCCTCGACTCCTGCGGCTCGGACGTGATCG
AGCTTGGCGTGCCCTACTCGGATCCGTTAGCTGATGGTCCAGTCATTCAGGCTGCAGCAT
CCCGCGCGCTTAAGAAAGGCACCACGCTCGGTTCTGTCTTGGGGATGCTCACGGAGGTTA
TACCGGAGCTGTCTTGTCCAATAGTTCTCTTCACATACTACAACCCGATTCTAAGGAGTG
GGGTGCGGAACTTCATGGCTAAGATTAAGCAAGCTGGTGTACATGGTCTTGTCGTGCCTG
ATCTTCCTTTGGAGGAGACAACATTGTTGAGGAGTGAGGCAACTATGCATAACATAGAGC
TGGTGCTACTTACAACACCAACCACACCAACAGAGAGGATGAAGGAAATCACAAAAGCTT
CAGAAGGATTCGTTTATCTTGTGAGTGCTGTCGGAGTTACAGGTGCACGCTCAAATGTAA
ACCTACGCGTTGAGCATCTTCTTCAGGAGATCAAGCAGGTTACAGACAAACCTGTGGCTG
TTGGCTTTGGCATATCAACTCCAGAGCATGCGAAGCAGATCGCAAGCTGGGGAGCGGATG
GTGTGATTATTGGCAGTGCAATCGTTAGACAGTTGGGCGAAGCCGCTTCTCCTGAAGAAG
GACTGAGAAGAATAGAAGAGTACGCCAAGAGCATCAAGGCTGCTATTCCATGAGATGGGC
AGTTCCATCATGAACAAGCCAATTAGTAGATCGTAAGCATGTTGTTTATCATCTGGTAGT
CTGCTCGGTGGACCTGGAATCTGTAATTCGTCCAGCATATTTGATTCCAGTGCTCAAAAC
AATTATATCTTTGTGTGTTAGAATCACAATATGAATTAACAAGGTAATTGTTTCTCATTT
CCCTTTTGAGGAAAAAAATTGTGAGATGTGTGTTCTTATGTGGAAATATGGAATGTTAGA
ATTTGGAAGGACTTATCCTGAGAGGAGCAATACGATAAGTCCATGGTGCAT

Homology of Contig U35_6564 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58260.1	280	1e-152	protein\|indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g05467.1	276	3e-156
Arabidopsis v10	AT4G02610.1	275	5e-122	Aldolase-type TIM barrel family protein \| chr4:1147662-1149217 FORWARD LENGTH=275