barSeed - Barley Seed Development Database

Probe CUST_31297_PI390587928

Source Contig U35_39339

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31297_PI390587928	Hv_44K_v2	AGTCCTGTTAAAGATGACTGAAGAAGCTTCACTTTTTGGTGATGATATACCACCAAAACT	598	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.395	0.623	1.602	2.244	0.775	0.960
Raw	87.346	221.774	488.194	1111.056	131.585	176.486

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10933.1	1818	2e-24	1066 - 1125	100	60 / 60	plus	ABC17401
MLOC	MLOC_10933.2	1770	2e-24	672 - 731	100	60 / 60	minus	ABC17401
JLOC1	JLOC1_7196.1	1674	8e-25	832 - 891	100	60 / 60	plus
Harvest21	ABC35437	658	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_39339	658	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_39339 658 Hv_44K_v2
GAATCCCGGCACACTTAATGACCGGGACCTCGCAAGAACTATTTGATTTTATTGCCGCTG
CTTTGGCAAAATTTGTTTCCTCAGAGGGTGAAGATTTTCATCTTCTTGAGGGAAGGCAAA
GAGAACTTGGTTTTACTTTCTCTTTTCCAGTAAAGCAGTCTTCCATTGCATCTGGAACTC
TTATCAAGTGGACTAAAGGTTTTTCTATTGATGAAACGGTAGGCGCAGATGTGGTGGCTG
AATTAAGCAGTGCTCTGGACCGTCAGGGGCTTGATATGAAAGTGACAGCATTGGTAAATG
ATACTATAGGGACATTGGCTGGGGGCAGATATGATGACAGTGATGTCGTTGCTGCTGTTA
TTCTAGGTACAGGTACCAATGCAGCATACGTGGAACGTGCCAATGCAATTCCTAAATGGC
ATGGCCTCCTTCCCAAGTCAGGAGATATGGTAATTAATATGGAATGGGGGAACTTCAGAT
CGTCCCACCTCCCTTTGACTGAATTTGATCAAGCATTAGATGCAGAAAGCCTGAATCCTG
GTGAACAGATTTATGAAAAGCTGATCTCTGGTATGTATTTGGGGGAAATTGTGAGAAGAG
TCCTGTTAAAGATGACTGAAGAAGCTTCACTTTTTGGTGATGATATACCACCAAAACT

Homology of Contig U35_39339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45590.1	495	2e-137	protein\|hexokinase, putative, expressed
Brachypodium v1_2	Bradi2g18877.1	495	8e-140
Arabidopsis v10	AT4G29130.1	496	5e-120	\| Symbols: ATHXK1, GIN2, HXK1 \| hexokinase 1 \| chr4:14352338-14354865 REVERSE LENGTH=496