barSeed - Barley Seed Development Database

Probe CUST_31295_PI390587928

Source Contig U35_15381

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31295_PI390587928	Hv_44K_v2	TACCTTCTTTTGAGTGTTTAATGAAAATGATCGATCCTGCCACACATCACGTGGAACACA	972	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55651.1	918	7e-23	365 - 424	98	59 / 60	minus	ABC13718
MLOC	MLOC_55651.2	570	7e-23	26 - 85	98	59 / 60	minus	ABC13718
JLOC1	JLOC1_35926.2	2521	4e-23	2169 - 2228	98	59 / 60	plus
JLOC1	JLOC1_35926.1	2141	4e-23	1789 - 1848	98	59 / 60	plus
Harvest21	ABC13718	1131	3e-25	973 - 1032	100	60 / 60	plus	ABC13718
Harvest35	U35_15381	1131	3e-25	973 - 1032	100	60 / 60	plus

Contig Sequence (1131 bp)

>U35_15381 1131 Hv_44K_v2
GGGAGGAGGAGGTAGGAGCGTGTGGCATAGGAGTGTCTAGCAGGCGTCGGTCGCGGGTTT
AGAATTTCGTCCGGCCCCTCAAATTGGTAATGTACCTTTGTCTTGATTTATTAGTCCTCT
TTATATTATCATATTTTTACTATGATTCTAGCCAATAAAATATAAATTATTTTGTCAGAA
AAAATAATAATATTGTCAGTGTTGAACGATATAATTTTCCGTGAGGAAGAGGATGTCATA
ATTTAAAAAATGAGGCATTATTGCCTCAGGTTCTACTGTCAGTAGTAGTTAAAGCACTGT
GCATGAACGCACGCTAATAATGTCGGCCTTAGGCTGGCCATAGTGAGAGTAAATCAGGTA
GTATCATGTTCTTGGAACTAGCAAACATGCTGATGTGGCAGACAATTAAAGAAGAGAGGA
GGTTATAGTAACATAGGCAGATACCATAACGTTCATGGAGTGCAGGGTGGATGCGACGGT
GGTGGTGGCGGCGAGGAGGCAGAGGCATTCGTCGTTGACGGGGCAGGCGGTGAGCTGGCC
GCGGCGACTTGAATATCGCACCGCGAACCTCGCGCCGGCTGGCTGGGTGCTCCCCGCGCC
GGCACCTGCTCTGGGAAGAGCGGGAGTGATGGTGGGGAAGTGGCCGCCGCGTCCCCGGGT
GCCCGCCGCCCTCCCCGCGCACATGGTCGACATCAGCCCCCCAGCGCTGAAGGAGTAGGA
GGGGATGTGGAGGTCCTCAAAATCCATCGACTTGGCTTGCGTTGGGCACAAAGTCAAAGA
ATAAGGGTGGTGGCAAGAAAAAGAAAGGCAAGAAAGGAGATGCAGCAGAGCCCGTATGGA
GGTTTCTCAGGACGCACCAAGCCAGGAATAATTCGTTTTTTTCTTCTTCTTTGAATTGCT
TTTGTTACGTTTGTACCTGCTCCTTTGCTGCATCTGATTGTGTTATATTACATTCAGCTG
CGGGAATTTGAGTACCTTCTTTTGAGTGTTTAATGAAAATGATCGATCCTGCCACACATC
ACGTGGAACACAAGCCTGATAATTATGTATGGTGTGCTGAATGTTTACCTGTCAGTTCTG
CTTATAAATCTGGCTTAAGTTCAACATTTTTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15381 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None