barSeed - Barley Seed Development Database

Probe CUST_31294_PI390587928

Source Contig U35_15382

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31294_PI390587928	Hv_44K_v2	ACGGTGTGCAGAATGTTTACCTGTCAGTTCTGCTTATAAATCTGGCTTACAACTAAAAAA	1509	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.049	1.151	1.245	1.083	0.435	0.411
Raw	11112.623	18702.173	18027.833	24185.353	3489.810	3557.143

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC03176	1580	3e-25	1510 - 1569	100	60 / 60	plus	ABC03176
Harvest35	U35_15382	1580	3e-25	1510 - 1569	100	60 / 60	plus

Contig Sequence (1580 bp)

>U35_15382 1580 Hv_44K_v2
TAGTGGATCCCCGCTTCCATTCTAATCCGCCCCCTGCCGAGCCACCAACGCCCCAAACCC
CTCGCCCTCCCAAACCCTAACCCTAAAACCTCGGCCCTCCCGCCGCCGCCGCCCGATTCC
CCTCCCCAGTCTCCGCATCCCCTGTTCGGATTGAAGCGATGTCGTCCGACGAGGAGGTCA
GGGAGGAGAAGGAGCTCGACCTCTCCTCCAACGAGGTCGTCACCAAGTACAAGACCGCCG
CCGAGATCATCAACAAGGCTCTGAAGTTGGTATTGTCGGAGTGCAAGCCGAAAGCCAAGA
TTGTTGACATTTGTGAGAAGGGTGACAATTTCATAACAGAGCAAACTGGGAATGTCTACA
AGAACGTGAAGAGGAAGATTGAAAGGGGCATTGCTTTCCCGACATGCGTATCCGTGAACA
ACACGGTCTGTCATTTCTCCCCACTGGCAACTGATGATTCTGTACTCGAAGAAAATGACA
TGGTGAAGATTGATATGGCTTGCCATATTGATGGATTTATTGCTGTGGTAGCTCATACAC
ATGTCATCAAAGCTGGTCCGGTTACTGGAAGAGCAGCTGATGTTCTGGCTGCTGCCAACA
CAGCTGCAGAAGTTGCAATGAGGCTTGTTAGACCTGGAAAGAAGAATAAGGATGTCACTG
AAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCAAAATCGTGGAAGGAGTTCTTAGTC
ATCAGCTGAAACAATTCGTCATCGATGGTAACAAAGTGGTACTTAGTGTTTCCAATGCTG
ATACCAAGGTGGATGATGCTGAATTTGAAGAAAATGAAGTGTATGCAATTGATATTGTCA
CCAGCACTGGCGAGGGAAAGCCAAAGCTATTGGATGAGAAGCAGACCACTATTTATAAGA
GAGCTGTAGACAAGAACTATCACTTGAAGATGAAGGCATCAAGGTTCATCTTCAGTGAGA
TTAGCCAGAAGTTCCCAATCATGCCATTCACTGCTAGGGCGTTGGAGGAGAAGCGTGCAC
GCTTAGGTTTGGTAGAATGCATGAATCATGAGCTGTTGCAGCCATACCCTGTTCTCCATG
AAAAGCAAGGCGATCTTGTTGCCCACATCAAATTCACCGTGTTGTTGATGCCAAATGGGT
CTGACAAGATCACGTCACATCCACTACAGCAGTTGGAGCCCTCAAAATCCATTGAGGATG
ATGCGGAGATCAAGGCTTGGCTTGCTTTGGGCACAAAGTCAAAGAAGAAGGGTGGTGGCA
AGAAAAAGAAAGGCAAGAAAGGAGATGCAGCAGAAGCCGCAGAGCCCATGGAGGTTTCTA
AGGACGCACCAAGCCAGGAATAATTCGTATTTTTTTGAATTGCTTCCGTTACGTTTGTAC
CTGCTCCTTTGCTGCATCTGATTGTGTTATATTACATTCAGCTGTGGGGATTTGAGTACC
TTTTTTGAAGTGTCTAATGGAAATGATCCTTCTGCACATCACATCAAAGCTCAAGCCTGA
TAATTATGTACGGTGTGCAGAATGTTTACCTGTCAGTTCTGCTTATAAATCTGGCTTACA
ACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15382 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g28280.1	394	protein\|peptidase, M24 family protein, putative, expressed
Brachypodium v1_2	Bradi2g28680.2	395
Arabidopsis v10	AT3G51800.2	401	\| Symbols: ATG2, EBP1, ATEBP1 \| metallopeptidase M24 family protein \| chr3:19211261-19213568 REVERSE LENGTH=401