barSeed - Barley Seed Development Database

Probe CUST_31293_PI390587928

Source Contig U35_15383

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31293_PI390587928	Hv_44K_v2	TGAAGTGTCTAATGGAAATGATCCTTCTGCACATCACATCAAAGCTCAAGCCTGATAATT	636	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13565.1	1593	2e-24	1483 - 1542	100	60 / 60	plus	ABC03176 ABC13718
JLOC1	JLOC1_9192.1	1765	8e-25	1504 - 1563	100	60 / 60	plus
Harvest21	ABC03177	699	3e-25	637 - 696	100	60 / 60	plus
Harvest21	ABC03176	1580	3e-25	1446 - 1505	100	60 / 60	plus	ABC03176
Harvest35	U35_15383	699	3e-25	637 - 696	100	60 / 60	plus
Harvest35	U35_15382	1580	3e-25	1446 - 1505	100	60 / 60	plus

Contig Sequence (699 bp)

>U35_15383 699 Hv_44K_v2
AGATCATCAACAAGGCTCTGAAGTTGGTATTGTCGGAGTGCAAGCCGAAAGCCAAAGCTA
TTGGATGAGAAGCAGACCACTATTTATAAGAGAGCTGTAGACAAGAACTATCACTTGAAG
ATGAAGGCATCAAGGTTCATCTTCAGTGAGATTAGCCAGAAGTTCCCAATCATGCCATTC
ACTGCTAGGGCGTTGGAGGAGAAGCGTGCACGCTTAGGTTTGGTAGAATGCATGAATCAT
GAGCTGTTGCAGCCATACCCTGTTCTCCATGAAAAGCAAGGCGATCTTGTTGCCCACATC
AAATTCACCGTGTTGTTGATGCCAAATGGGTCTGACAAGATCACGTCACATCCACTACAG
CAGTTGGAGCCCTCAAAATCCATTGAGGATGATGCGGAGATCAAGGCTTGGCTTGCTTTG
GGCACAAAGTCAAAGAAGAAGGGTGGTGGCAAGAAAAAGAAAGGCAAGAAAGGAGATGCA
GCAGAAGCCGCAGAGCCCATGGAGGTTTCTAAGGACGCACCAAGCCAGGAATAATTCGTA
TTTTTTTGAATTGCTTCCGTTACGTTTGTACCTGCTCCTTTGCTGCATCTGATTGTGTTA
TATTACATTCAGCTGTGGGGATTTGAGTACCTTTTTTGAAGTGTCTAATGGAAATGATCC
TTCTGCACATCACATCAAAGCTCAAGCCTGATAATTATG

Homology of Contig U35_15383 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28280.1	394	5e-79	protein\|peptidase, M24 family protein, putative, expressed
Brachypodium v1_2	Bradi2g28680.2	395	1e-84
Arabidopsis v10	AT3G51800.2	401	2e-56	\| Symbols: ATG2, EBP1, ATEBP1 \| metallopeptidase M24 family protein \| chr3:19211261-19213568 REVERSE LENGTH=401