barSeed - Barley Seed Development Database

Probe CUST_31267_PI390587928

Source Contig U35_41567

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31267_PI390587928	Hv_44K_v2	TAACCACGATTGCCCTTGCTTGATTTCTATCATTTTTTCCTCACAGTAGTATCGTGTCTC	573	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12967.3	1323	2e-24	543 - 602	100	60 / 60	plus	ABC24516 ABC43113
MLOC	MLOC_12967.2	1839	2e-24	630 - 689	100	60 / 60	plus	ABC24516 ABC43113
MLOC	MLOC_12967.1	2096	2e-24	655 - 714	100	60 / 60	plus	ABC24516 ABC43113
JLOC1	JLOC1_8742.3	1671	8e-25	610 - 669	100	60 / 60	plus
Harvest35	U35_41567	710	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_41567 710 Hv_44K_v2
CACGCGTCCGCGCTCGTCCGACACCTCCTTCCCCGTCTTCGTCCAAGCTAGGGTTTCCTC
TGCTGACCCCCGGTCGTGCTTCCGGCCGCTACTTGCATCTCTCCGCCCTCCATTCTTTCC
ACTCCTCGAGCCTATGTGATATGGCGAGCACAACATGCTTCGTGATCGTTAGTAAGAATG
ATATCCCAATCTATGATGCTGAAGTTGGATCAGCTCCAAAAAAAGAAGATCAGGCTTATC
AGCATCAGTTCATTTTGCATGCTGCATTAGATGTTGTTCAGGATCTTGCATGGGCTACAA
GTGCGATGTTTCTGAAGTCAGTAGATAGATTCAACGATCTTGTGGTGTCTGTTTATGTAA
CTGCTGGTCATATCCTTTGAGTGCGTATATGTAGTGTCTTTTTAGAGAGCCGAAACCTTG
TGTGATGTCTTAGCAGAAGAAGAAACTAGAAATGCGAGAATTTAGTGATAATTCATAATT
ATCATTATTCTGTCTGCAAACGACTTAAGATATAGCCGTAACAGGTAAATTTGTTGTCTT
GTGTGTGTCTTTAATTCCTGCGAGTAATACCCATAACCACGATTGCCCTTGCTTGATTTC
TATCATTTTTTCCTCACAGTAGTATCGTGTCTCCTANTAAAAAACAGTTGGTGATGGAGG
TGTGTCTGCCATCCGTCATTCTGACCATACAGTCTGCATCCTACACATTG

Homology of Contig U35_41567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None