barSeed - Barley Seed Development Database

Probe CUST_3125_PI390587928

Source Contig U35_6568

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3125_PI390587928	Hv_44K_v2	TAATAAGCTCCTTTGAAAAGCATTGGCGCACGTGTAAACGAGTTGCTCTACCGAACTGAG	1	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.774	0.515	0.588	1.063	1.972	2.140
Raw	220.711	195.315	235.855	609.336	414.409	517.895

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54722.1	388	2e-24	260 - 319	100	60 / 60	minus	ABC19768
JLOC1	JLOC1_35235.1	373	8e-25	260 - 319	100	60 / 60	minus
Harvest21	ABC19768	645	3e-25	2 - 61	100	60 / 60	minus	ABC19768
Harvest35	U35_6568	1518	3e-25	2 - 61	100	60 / 60	minus

Contig Sequence (1518 bp)

>U35_6568 1518 Hv_44K_v2
GCTCAGTTCGGTAGAGCAACTCGTTTACACGTGCGCCAATGCTTTTCAAAGGAGCTTATT
ATGCAATGAACATAATCGATCTTATTGCAAAATCAATGTCTTACTTCATAGATTCGAGAG
AATAGGAGAACAGTAGCCTGACAAACAGTCGGTTCAGTCCGATTCAGGTGCCAATTCAGG
TGCCTAATCAAATAGAACCCTTATGGATTTGCTAGTTGATAAGGTAAATATCCAGCCCAC
TAAATGCTAGGCGTAATGAGGATAAGGGCCTCCAAAAAACTTCTTTTCGTTCTATGAACT
TTAAGGTGTATGAAGTCTCATAGTTAACTCTTGCAGTGGAACGATAGAGACTCCATTTCA
CTTAGGTTGATTTAATTTAGACCAGAGGCAGACCTAAGTCAAGGTAATCCTCCTTTGAAA
CACTTTGGTATTGCTCCTAGATAGATCATAATACAAAAAATCAATCAGAGCACAGGGAGC
CATCTCATTATCTTTCCGTAAAGAAAAACTATGGTGGACTAACTGATCTTTAAATCAGTT
TATGAAAGAGCCCAATGCAAAAAAATGCATGTTGGGTCTTTGAAACAGTTCAAATCATTT
CGATAATAATCCGTTTGATCTGTTTTACCGAGAAGGTCTACGGTTCGAATCCGTATAGCC
CTAATATGCCCTTTTTTCTATTTTAGGATCTCTATCCTATGTTTTCTTTAGTTTAGTATA
GTTTTCATTTTCGCATTAGTATTTGTTTATAGACTGGATAGGCGCCTGCGACATAGAATA
GAGATAAAAGCATTACCAAAGGCTCATTCATCGAAAATCAAAATCATACAGACAGGAAAA
GAAAAACGAAAAATAGAAAAAATAAAGTAAAGAGTAAATAAGAAAACAGAATATTCTGTC
TCATAGTTCTGAAATAGAGTTCTTTATTTTTATTTTTATAGTATTACTTCTCATTATACT
GCATAGATTAGTCCTACTATCTTAATTAGGTTCTAATTATTCTAATTAGTAGTATTCTCA
TTTTTATTTAATAGTCTCTTATTATTATTAAATAGTAAATAAAGGATAGAGCTATTCTTT
TTTTATAGAGATTCTAGAGAAAGCGAGACAAAGTGAAACGATAAAGTTTTCTTTATATAA
GAATTAGATCTACATACACCATATCTAAATAGAATGGAAATCCAAAAGAAAGGGAGTTGG
GATTCCATTGGATGAATCTTTAAAGAAGATGCAGCACAGAGGAAACAAAGGCTAAACTAA
GCGCTTTTGTTTGAACAAAAAAGATTCTTGTTTCACCGAGGAAAAGAGAGAAGTTCTGGA
TAAATTGACAATGCTGAATTGAATTGACTAATTTAAGTTCCGCCTATTCCACATTAATGG
GAGTACATTATGTTTCTGCTTTACGAATATGATATTTTTTGGACATTTCTAATAATAGCA
AGCCTTATTCCTATTTTGGCATTTTCGATTTCAGGGCTTTTAGCCCCGGGTTAGTGAAGG
ACCAGAGAAGCTTTCTAG

Homology of Contig U35_6568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None