barSeed - Barley Seed Development Database

Probe CUST_31249_PI390587928

Source Contig U35_41572

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31249_PI390587928	Hv_44K_v2	TACGCGCAGGTCATGCTCATGCCGGAGCCGGAGCAAAATGAGATGGCGGTGGACAAGGTC	450	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68907.2	2868	7e-23	2620 - 2676	100	57 / 57	minus	ABC01664 ABC39899
MLOC	MLOC_68907.3	2693	7e-23	2458 - 2514	100	57 / 57	minus	ABC01664 ABC39899
MLOC	MLOC_68907.1	2905	7e-23	2637 - 2693	100	57 / 57	minus	ABC01664 ABC39899
MLOC	AK368785	3126	3e-21	451 - 507	98	56 / 57	plus	ABC01664 ABC39899
JLOC1	JLOC1_45636.2	3013	4e-23	176 - 232	100	57 / 57	plus
JLOC1	JLOC1_45636.1	3192	4e-23	126 - 182	100	57 / 57	plus
Harvest21	ABC01664	2804	1e-23	111 - 167	100	57 / 57	plus	ABC01664
Harvest35	U35_41572	510	3e-25	451 - 510	100	60 / 60	plus
Harvest35	U35_14993	3170	1e-23	470 - 526	100	57 / 57	plus

Contig Sequence (510 bp)

>U35_41572 510 Hv_44K_v2
CCTCCCCACAAAACATTTCCTTCCTCTTTCTACTGCCGCTCCGCTACTACTCCTCTCCCC
TCCCCTCCTCTCGCTTCCCCTTTCCTCCATCTCCCACCCCTCGCTCCCTCCCCGCAGCCT
CCTCGCGCAGCAGCAGCTAGGGTTCCTCGCGCCGCGCCGCCGGCCAGCAGAAGCAGCAGA
TGCCGCCGCCCGCCATGGCGACGCCGCAGGCACCCTCCGCAGGGGATCCGCTCCTACGAC
GAGCTCTGGCACGCCTGCGCCGGCCCGCTCGTCACCGTCCCGCGCGTCGGGGACCTCGTC
TTCTACTTCCCGCAGGGGCACATCGAGCAGGTGGAGGCCTCCATGAACCAGGTCGCCGGC
AACCAGATGCGCCTCTACGATCTGCCGCCCAAGCTGCTCTGCCGGGTCATCAACGTCGAG
CTCAAGGCGGAGGCGGACACCGACGAGGTCTACGCGCAGGTCATGCTCATGCCGGAGCCG
GAGCAAAATGAGATGGCGGTGGACAAGGTC

Homology of Contig U35_41572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70270.4	777	1e-51	protein\|auxin response factor, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None