barSeed - Barley Seed Development Database

Probe CUST_31242_PI390587928

Source Contig U35_41577

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31242_PI390587928	Hv_44K_v2	GTTGATGACGGAGGGAGTAAGTTCTATGGAAACTTGAGCTATTCAGATCTAGTTAATGGG	607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354329	2839	2e-24	696 - 755	100	60 / 60	plus	ABC09508 ABC09509
MLOC	AK365092	2850	2e-24	610 - 669	100	60 / 60	plus	ABC09508 ABC09509
MLOC	MLOC_43821.1	1805	2e-24	511 - 570	100	60 / 60	plus	ABC09508 ABC09509
MLOC	MLOC_43821.3	1690	2e-24	499 - 558	100	60 / 60	plus	ABC09508 ABC09509
MLOC	MLOC_43821.2	2058	2e-24	502 - 561	100	60 / 60	plus	ABC09508 ABC09509
JLOC1	JLOC1_28345.1	1964	8e-25	474 - 533	100	60 / 60	plus
Harvest35	U35_41577	667	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_41577 667 Hv_44K_v2
GGGCCGCCGTGGGCGGAAGCACGAATCCCCCCGATATCCCTCCCCTCCCCGATCCCAATC
CCGACCCCGACCCCGACCCCGTCGCCCGCCAGATCTCGCCCCTCGGGCCCGATCGCCATC
GGCGGCGGCGGAGGCTGCTGCACCGGCCGGCCGCGGGCGGTTCCGGGAGATCTGGCCGAG
ATTCGGCTCGGGCTGCCGGGTTGGCGGGAGGAGCCGGGTGCCCATGGCGTCGGCGTCGGC
CTCCACCGACGTCGCGTCCTCGCGCGAGGCGAGCCGCCAGGCCGGGAAGAAAGCGCTGGA
GGAGTTCCGTAAGAAGAAGAAGAAGGCTGCGAAGAAGGCCGCCACCACCGCTGTAGTAGA
CCAGGCAGCGCCTGTGGTTCCCAGCGTAGTGGAGACCCCCCTGCCAAATTCCAATAATGG
TAACACCGGAGAGGGTTTGGTGTCTGATTTGGACTCAAGCACAACACCGAGCACATCATC
TGCGCCGTCTGCTTCCTATGAGAATGGCCCGACCACTTCTTCCAGAGTCGCGGAATTTCT
GTCGAATGGTCCTGTCGTTGCAGATGCATCAGCTAATGTTAGTACTGTTCCCCCCATTCA
AGATGTCGTTGATGACGGAGGGAGTAAGTTCTATGGAAACTTGAGCTATTCAGATCTAGT
TAATGGG

Homology of Contig U35_41577 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None