barSeed - Barley Seed Development Database

Probe CUST_31241_PI390587928

Source Contig U35_27284

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31241_PI390587928	Hv_44K_v2	GTTGTGTTATAACGAGAGAAGGGATTCTTGGAAGAATGCACGGTTGCTATCCTTTTTTAT	545	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.635	2.861	1.337	0.765	0.396	0.553
Raw	1752.910	2920.359	1216.594	1062.648	197.510	300.555

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6874.1	1713	8e-25	1594 - 1653	100	60 / 60	plus
Harvest35	U35_27284	641	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_27284 641 Hv_44K_v2
ACATTCTGTCTGAATTGTGGCATATTAGCTCTGGATGAGCCAACCACCAATCTTGATGGA
CCCAATGCTGAGAGCCTAGCTGCTGCTCTATTGAGAATAATGGAGAGCAGAAAAGGCCAG
GAGAACTTCCAGCTGATCATAATCACCCATGATGAGCGGTTTGCTCAGCTTATCGGTCAG
AGGCAGCTTGCGGAGAAGTATTACCGGATCTCCAAGGATGAGCAACAACACAGCAAAATA
GAAGCCCAAGAGATATTTGACTGATGATGGCTGCTTGCAACATATATGCTCTCGGTGCTA
ATCCTCCTTTACCGGCCAAGTGGGTGCGGTTCATTATGATGGGCTGTCATGGAGAGAAAT
GGGTACAAGCGAACTAGTAGTAGGTTCTTTAGTTTGGTTTTTGTGCATGCAATTGCCTGC
TTATTGTTGTATATAATCTGGAGGTGCTACTGTGTTGTGACTTATATCTCTTCTCTCTTT
ATTCTTAAATTGACTCCTAATTCAGCCACCACGCCGAGCAACGTCGTGTAATGACGGAAA
AAAGGGTTGTGTTATAACGAGAGAAGGGATTCTTGGAAGAATGCACGGTTGCTATCCTTT
TTTATGTCAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_27284 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None