barSeed - Barley Seed Development Database

Probe CUST_31238_PI390587928

Source Contig U35_41579

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31238_PI390587928	Hv_44K_v2	GCGAGATGGACAACCACTTCAACACCTCCAAGTCCAACAAGCACCTCTGGGAGGCCATCT	339	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353943	1600	2e-24	292 - 351	100	60 / 60	plus	ABC12607
MLOC	MLOC_64014.1	1134	2e-24	695 - 754	100	60 / 60	minus	ABC12607
JLOC1	JLOC1_41991.1	1356	8e-25	381 - 440	100	60 / 60	plus
Harvest35	U35_41579	622	3e-25	340 - 399	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_41579 622 Hv_44K_v2
CTCTGATAAGTTTGTCCTCCTCCGGGACTCCGACCGCCCTCGTCGGCGAGAGGGCCCCGG
CTGCGCTCTCCAGTGAGCCTCCACTCCCACCACCGCCTCCCTCGCCTCACGCACGCAGCA
CAGTCTCGCTCCCGGACCCCACCACCCGCGCCGCTCCTCCGCCGCGGCGATGCTCCTCGC
CGGGCCGCAGCCCCCTACCCCGTCGCTGCTGCTCCCGGAGAAGCAGCGGCGAGGACGGCG
GCGCCCACGACCACGACTCCTCCTCGCGCGCCTCGGCCCCGAAGAAGCGCGCCGAGACCT
GGGTCCAGGACGAGACGCTCAGCCTCATCGCGCTGCGCCGCGAGATGGACAACCACTTCA
ACACCTCCAAGTCCAACAAGCACCTCTGGGAGGCCATCTCCGCCAAGATGCGGGAGCAGG
GCTTCGACCGCTCCCCGACCATGTGCACCGACAAGTGGCGCAACCTCCTCAAGGAGTTCA
AGAAGGCGCGCAGCCACGCCCGCAGCAGCGGCGGCGCCAGTGGGAACGGCTCCGCCAAGA
TGGCCTACTACAAGGAGATCGACGACCTGCTCAAGCGCCGCGGGAAGGCGGCCAGCTCGC
CCGCGGGGAGTGGTGGTGGGGG

Homology of Contig U35_41579 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None