barSeed - Barley Seed Development Database

Probe CUST_31237_PI390587928

Source Contig U35_27286

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31237_PI390587928	Hv_44K_v2	TGGTGTTGATGCTTATGGGCGCGAATGTGGCCGTCTACATGCTCTGGCACATGGTCGATC	486	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355875	1328	2e-24	456 - 515	100	60 / 60	plus	ABC16251
MLOC	MLOC_45545.2	480	2e-24	343 - 402	100	60 / 60	minus	None
MLOC	MLOC_45545.1	529	2e-24	307 - 366	100	60 / 60	minus	None
JLOC1	JLOC1_29566.2	414	8e-25	170 - 229	100	60 / 60	plus
JLOC1	JLOC1_29566.1	280	8e-25	36 - 95	100	60 / 60	plus
Harvest21	ABC23225	546	3e-25	487 - 546	100	60 / 60	plus
Harvest35	U35_27286	547	3e-25	487 - 546	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_27286 547 Hv_44K_v2
CAAAACCGTACCGGTGGCTACCGCCCGAGGTCGGGGAGTCGGCGGCGGAGGCAGGCAGGC
AGGCAGGCAGGCAGCCAACCCGTGTCTTGGTGGAAGCAGAAATGGCGATGCGGAGGAGGC
TGCCGCAGTTCCAGACCCTCCTCGCGCAGCAAGCCCTACGCAGCGCCATCCCAAAACCCA
GACCCCTAGCCAACCCCCTCATGCGCCCCCTCCACTGCCCCTCCACGCCAGCAGCCGCCT
CCCGCTCCCCGCTGTCCCACTCCCTCTGGCGCAGCCCAGGCAGCGGCGGGACGCTCCTAC
CGGTGAGCGCAGCGGCCGTCGCGGCGGCCGCCCGGGCCGCCACCAAGCGGTGGCTGACCG
CGCGCGCCGCCGGGTCGCTCGAGCTCTTCTCGCTGCAGCGGAGGAGGTCCTCGGACTGGC
TCTCTTCGTCCTCAACCTTCCCCCGCCGCGTACCCTGNGGGCGCTGGCTACCATCAGCGG
ACGGGATGGTGTTGATGCTTATGGGCGCGAATGTGGCCGTCTACATGCTCTGGCACATGG
TCGATCC

Homology of Contig U35_27286 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None