barSeed - Barley Seed Development Database

Probe CUST_31236_PI390587928

Source Contig U35_27287

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31236_PI390587928	Hv_44K_v2	ATCATGCCATCCGCACTTGCTCATAATCTTTTTCTTTTTGTGAATAAAAGGGGTCCCCCC	255	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53424.1	1012	2e-24	951 - 1010	100	60 / 60	plus	ABC09853 ABC21829
JLOC1	JLOC1_34324.1	984	8e-25	920 - 979	100	60 / 60	plus
Harvest21	ABC21829	361	3e-25	256 - 315	100	60 / 60	plus	ABC21829
Harvest35	U35_27287	361	3e-25	256 - 315	100	60 / 60	plus

Contig Sequence (361 bp)

>U35_27287 361 Hv_44K_v2
GCCGAGGAGCACACCATCGTCGAGGCCCACCCGGAGGTGTACGCCCGGATGCTCAAGCTC
GGGTGGGGTGAGAAGAAGAACGTCAGGATCCTCTTCGGGCGATGGCAGGACGTGATCCCG
CAGCTCGGCTCGTATGATGGTATGACAAAATCATTCACCCTTCTAAAGCTTGTTGCTGCC
ATTTTGAGCTTTGAAACATCATGTTGCTTGCTTGTTTGGGGATAGATGTCAATCTGCATA
TTGTTGGTGTGCTGGATCATGCCATCCGCACTTGCTCATAATCTTTTTCTTTTTGTGAAT
AAAAGGGGTCCCCCCCCCCCCCTGCTCCACTTTATTAATGAAGCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_27287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None