barSeed - Barley Seed Development Database

Probe CUST_31226_PI390587928

Source Contig U35_41581

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31226_PI390587928	Hv_44K_v2	GGGCCCGAGAGGTCACCGCGGTCGAGCTGCCCCGTCAGGGCCTCCGCGGCGACTTCTCGG	323	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361095	2968	2e-24	338 - 397	100	60 / 60	plus	ABC38394
MLOC	AK363806	3074	2e-24	340 - 399	100	60 / 60	plus	ABC38394
MLOC	MLOC_21400.1	535	9e-22	1 - 55	100	55 / 55	minus	None
JLOC1	JLOC1_14849.1	427	8e-25	9 - 68	100	60 / 60	minus
Harvest35	U35_41581	443	3e-25	324 - 383	100	60 / 60	plus

Contig Sequence (443 bp)

>U35_41581 443 Hv_44K_v2
CGGCCTCCCTTCTCCCGTGCTCTCTGCCTTCACCCAAGAAAAGCAAGCACTCACGGGCGG
GGCCTGGCCGCCGCCACCACCACCGCCCCACCTCGGCGGCCCCGGCCGAGCGAGCGCCAC
CCCCACGCCCGGCCCCAAATGCATCCCGCCTTCCGCCGCTGCCTTTTCCTCTCCCTCGGC
CTCATCTCGGCCTCCCTCCTCGCGCTCCGGGCGGGCGCCGGAGATGCGNGTGGCAATGCA
GGCGCTGCGCCGCGGGCTGGCGCCGCCGGACTGGACGGCCGCGCCGGCAGACTACTGCGC
CTGGCGCGGCGTCACGTGCTCCGGGGCCCGAGAGGTCACCGCGGTCGAGCTGCCCCGTCA
GGGCCTCCGCGGCGACTTCTCGGCCGCCGGCGGGCTCCGGGCGCTGGCGCGGCTCGATCT
CTCCTTCAACGCGCTCGCCGGCG

Homology of Contig U35_41581 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None