barSeed - Barley Seed Development Database

Probe CUST_31220_PI390587928

Source Contig U35_41587

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31220_PI390587928	Hv_44K_v2	GTTGATTATGAAAAAAGACTCCGTGAAAGTTCAGATTCTATGCAAGCTTTAGAGGAGAGC	443	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.184	1.119	1.165	0.648	0.483	0.374
Raw	253.352	348.202	335.379	265.171	76.369	65.860

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54546.4	2368	2e-24	2258 - 2317	100	60 / 60	minus	None
MLOC	MLOC_54546.5	2365	2e-24	2255 - 2314	100	60 / 60	minus	None
MLOC	MLOC_54546.1	4128	2e-24	4017 - 4076	100	60 / 60	minus	ABC07755
MLOC	MLOC_54546.2	4125	2e-24	4014 - 4073	100	60 / 60	minus	ABC07755
JLOC1	JLOC1_35112.3	6486	8e-25	2149 - 2208	100	60 / 60	plus
JLOC1	JLOC1_35112.2	6489	8e-25	2149 - 2208	100	60 / 60	plus
JLOC1	JLOC1_35112.1	4759	8e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_41587	653	3e-25	444 - 503	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_41587 653 Hv_44K_v2
GAATCACAGATGACGCTGCATCAAGAGTTGAAAAAGTTATGAAGAAATCTGAAGAACAAG
CAATAATGATTGAATCTCTTCATAGATCTGTTGCGATGTACAGGAAACTATGTGAAGAAC
AGCAGAAGACTCGTTCCAGTATAGAAAACATATCCACTAATCTGCAAGATGATGGCAGAA
AGGACCTGATGGTGCTGTTTGAAGGATCGCAGGAGATCTCGAAGAAAACACATGAACAAG
TCTCTGAGCGGGCCAGAAAACTCGATGAAGAGTTGACCAAGTTGAGGACTGAGCTGATGT
CTTTGCGATCTGAGCGTGACAAGGCAATGCTGGAAGCTAGTTTTGCTCGAGACCGGCTTA
ATGGGTTCATGGCCGAGATTGATCACCAGAGAAAGGAAGCTAATTCTGTTTCACTCAGAA
ATGCGGAGTTGATGCATTTAGTAGTTGATTATGAAAAAAGACTCCGTGAAAGTTCAGATT
CTATGCAAGCTTTAGAGGAGAGCTCANGGAAGCTGTCAATGGAGGTGTCTATTCTAAAGC
ATGAAAAAGAGATTTTAGTANAGTCAGAGAGAAGATCTTTGGACGAAGTNCACAGTTTGT
CCGAGAGAGTGCACCGTCTGCAGGCCACCATGGATACAATACATACTACTGAC

Homology of Contig U35_41587 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi3g59627.1	2070	9e-116
Arabidopsis v10	AT1G79280.2	2115	4e-63	\| Symbols: NUA \| nuclear pore anchor \| chr1:29819176-29832809 REVERSE LENGTH=2115