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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_31218_PI390587928Hv_44K_v2CACGGAAAAAGGTCCCTGAGCAAGATGATTGTGAGAACCATGTTCGAGAAATTGAGGAAG576GeneList: darkturquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2090.3101.2912.4681.1161.120
Raw 8.23716.53770.521210.64334.02237.303



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37249218002e-24687 - 74610060 / 60plus None
MLOCMLOC_13673.118642e-241071 - 113010060 / 60minus None
MLOCMLOC_13673.217802e-24987 - 104610060 / 60minus None
JLOC1JLOC1_9272.219108e-25739 - 79810060 / 60plus
JLOC1JLOC1_9272.118538e-25739 - 79810060 / 60plus
Harvest21ABC238297063e-25577 - 63610060 / 60plus
Harvest35U35_272957063e-25577 - 63610060 / 60plus



Contig Sequence (706 bp)

>U35_27295 706 Hv_44K_v2
TATCGTCTTCGGCGCCCAGGTCTTAGGCTCTCTGATTGGAAGAAAGGAAAGGCTGGGTTA
CCATGGGCATTTCGGCCAAGTGGATTAAATCACTGGTTCGCATAAGAAAGCAGGAAAAGG
GGCGGGGTTCAGAAAATCAAGAAAAGGCAGAAAATGCCGAGAGCAGCGAAGCCAGCTCTT
CTGCTCGACAGCTACACAAACGAAAGCATTCTCTGGATCTTGCAGTAGAAGAACTTGCAG
TACCTAACGAAACATCGACGGATGGCACCAACACACAGTTAGGTTCAAATTCCGTTTCAT
CAGAAAGTGCATCACGTGATGCACATGTTTCTCTGACCGAAGAACTTCTTACAGAAGGGG
ATTTGGCTGCAACAGTTATTCAGTCTGCATTTCGGGCATTCTTGGCTAGACGGGCTTTGC
GAGCACTGAAAGGCATAGTTCTACTCCAGGCCCTTGTGAGGGGCCATATTGTGAGAAAGC
AGACAGCAGAAACACTTCAGTGTATGCACGAGCTGGTAAGGGCCGAAGCTCGTGTCAGAG
CAAGGCAAGCCGGTGTTGCATTAGAAAACCAAGTGGCACGGAAAAAGGTCCCTGAGCAAG
ATGATTGTGAGAACCATGTTCGAGAAATTGAGGAAGGGTGGTGTGGCGGTATTGGTTCTG
TGGCCGAAATGCAAGCTAAAGTACTGAAAAGGCAGGAAGCTGCTGC



Homology of Contig U35_27295 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g44610.14411e-65protein|IQ calmodulin-binding motif domain containing protein, expressed
Brachypodium v1_2Bradi1g13650.44196e-69
Arabidopsis v10None