barSeed - Barley Seed Development Database

Probe CUST_31216_PI390587928

Source Contig U35_27296

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31216_PI390587928	Hv_44K_v2	TTATCTGATGAGCTGTTCGTGTTAGATGGAAATGTTTTGGCATTCCATAATCTAAGATTC	978	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.355	2.089	1.688	0.683	0.498	0.465
Raw	19.453	43.747	33.249	20.973	3.873	4.748

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62466.1	1831	2e-24	346 - 405	100	60 / 60	minus	None
MLOC	MLOC_62466.2	1699	2e-24	334 - 393	100	60 / 60	minus	None
JLOC1	JLOC1_40877.1	3903	8e-25	3500 - 3559	100	60 / 60	plus
Harvest21	ABC49994	589	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_27296	1038	3e-25	979 - 1038	100	60 / 60	plus

Contig Sequence (1038 bp)

>U35_27296 1038 Hv_44K_v2
ATTATAGAACTTCAATCCATGAACGATCTTGTCCAACTTGGGATTTCCCAACTTCAAAAT
GTTAAAACTCGGGAGGAGGCTCACCGTGCTGGACTGCAAGACAAATGGCACTTAGAAAAG
CTGTACTTGTCCTGGAAAGACATCATGTCATATGTTGAATATGACTTGGATGACAGTGAT
GAATATCTCAGTAGCATGCCCTATGAACCTTCTACCATCATAGAAATAGAGTGTTTGCTA
ACAGAGGTGCATGTGGGTCCTGAAAGTTCTAGCAGCGGTGTGGAAATGGAGGAGCGCTTG
CTAACGCAGGTGCACGAGATTCCTGAAGCTTGTACCAGTACAGAAATGGAGGAGCACTCG
CCAGCAGAGGTTCTTGAGGGTCTTAGACCATACAAAAATTTAAAGCATCTTCGGATATCT
GAGTACAATGGTGCTACCTCTCCATCTTGGCTTGCCAGCAATGCCCCAGTTACCTCTTTA
CAGACGCTTCATTTAGAAAACTGTGGAGAATGGCAGATACTTCCATCTCTTGAAGGGCTT
CCGTTTCTTGCAAACTTAAGCTTGAGCAACATGCCAAAAGTAAAAGAAGTATCCATTCCT
TCGTTGGAGGAGTTGGTGTTAATTAAAATGCCAAAGTTGGAGAGATGCTCCTGCATTTCC
TTGAATGACTTGAACTCTTGTTTAAGGGCTCTTATAATTCAGAACTGCCCTGCACTGAAG
GTGTTTGATCTGTTCGGGAACGGCCATAAATTCAAAATTGAGCAGAATTCATGGTTGCCA
CGTCTTTGTGAACTTACTCTAAAGAACTGTCATATTTTGGTGGTACCACACCCTTTACCA
TCCTCAAGTACTGCTTGTCGTATTTCCATGAGCAGAGTCCCGAAATTTCCAAGAATAGAG
GTATCGTCCAGCGGAAGTTTAACCATCGGCGAAGATTTTGATGACTATGATTATGATTAT
GATCTTCCTTTTGACAAGTTATCTGATGAGCTGTTCGTGTTAGATGGAAATGTTTTGGCA
TTCCATAATCTAAGATTC

Homology of Contig U35_27296 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53120.1	1886	1e-74	protein\|NB-ARC domain containing protein, expressed
Brachypodium v1_2	Bradi5g22187.1	1751	3e-59
Arabidopsis v10	None