barSeed - Barley Seed Development Database

Probe CUST_31209_PI390587928

Source Contig U35_39275

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31209_PI390587928	Hv_44K_v2	CACGACGTGAGAAAATAACCGAGCGGATGAAAATTCTGCAAGATCTTGTCCCTGGATGTA	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369263	1269	2e-24	590 - 649	100	60 / 60	plus	None
MLOC	MLOC_58414.4	903	2e-24	595 - 654	100	60 / 60	minus	None
MLOC	MLOC_58414.5	1068	2e-24	760 - 819	100	60 / 60	minus	None
MLOC	MLOC_58414.3	886	2e-24	600 - 659	100	60 / 60	minus	None
MLOC	MLOC_58414.1	2009	2e-24	625 - 684	100	60 / 60	minus	None
MLOC	MLOC_58414.2	2174	2e-24	790 - 849	100	60 / 60	minus	None
JLOC1	JLOC1_37945.2	989	8e-25	316 - 375	100	60 / 60	plus
JLOC1	JLOC1_37945.1	875	8e-25	202 - 261	100	60 / 60	plus
Harvest21	ABC35337	621	3e-25	562 - 621	100	60 / 60	plus
Harvest35	U35_39275	621	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_39275 621 Hv_44K_v2
GGCCCTCCCCTGCGCAAGTGCACAGTGGGTCAGTGCCGCGGCGAGCTCCCCCTCCCCCAG
CCTCGGCCTCCCCACCCGATCTGGTCTCCCCCCTCCGTCCGCGGACGCGCGCCCCCCGCC
GAAACCCTAGCGCTCCGCCGCGCGAAGGGGCGATGGAGCCCGCCCCGCAGCTCAAGGCCG
AGCCCTGGCGCCCGCCGCACCGCGCCGGCGGCGGCGGGCGCGCGGGCGAGGCGTCCTCCG
CCGTCACGGGCCAGAGCAGCGGCAGCCGCCCGCGGAGGAGGCAGCGGGAGCCCCCCGCGT
CCGAGGACGACTCCGCCTCCGCCAGGCCCGTCTCCACCTCCGGCGGCTCCGGCGGCCAGG
ATTTGACTGATGCAGAAGCAAAGCGTTTCAAGGCCAATAAATCCAGTGATGATAATGGCA
GTTTCAGAAAAGATGCTGAAGCTGATTCAAGAAATGCTAGTAAGGCTGTTGACCAAAATC
CTCCGCCACCAAAACAAGATTTCATCCATGTGAGGGCAAGAAGGGGTCAAGCAACTGACA
GCCATAGCCTTGCAGAAAGGGCACGACGTGAGAAAATAACCGAGCGGATGAAAATTCTGC
AAGATCTTGTCCCTGGATGTA

Homology of Contig U35_39275 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g05037.1	244	7e-56
Arabidopsis v10	None