barSeed - Barley Seed Development Database

Probe CUST_31208_PI390587928

Source Contig U35_39276

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31208_PI390587928	Hv_44K_v2	AAGGCGATCAAAATTCGCAGTTCGAGCAAGGTAGATACTATCGGATAAGAAGGGTCTAAA	0	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.676	3.451	1.090	0.617	0.679	0.890
Raw	19648.633	18232.570	5136.647	4448.460	1685.620	2547.390

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_39276	324	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (324 bp)

>U35_39276 324 Hv_44K_v2
TTTAGACCCTTCTTATCCGATAGTATCTACCTTGCTCGAACTGCGAATTTTGATCGCCTT
CCATACTTCACANAGCTGCGGGGCTAGTTCAGGACTCCNATTTGCANAGCTGCTCCGGAT
AATTTCATTACNCTTCGCGAGCAAGATCACGCCGCTTCGTTACTGAGCTTGTACACAGAG
CTTCTAAAGCCACTCGGATTAGCTTGCTGCACCAGCGTGCATTCCCCCAAGAGATGTCCT
AAAGTTCCTCCACCATTTTGTAATACAGAATCCCCCCCAAAGATTTCGGGCCGATTTTTT
ATATGCCAAACATGAGTACCACCT

Homology of Contig U35_39276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None