barSeed - Barley Seed Development Database

Probe CUST_311_PI390587928

Source Contig U35_32027

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_311_PI390587928	Hv_44K_v2	ATGGAGCAGAGGATGAAATTGATAGAGCAGAAGAGCGCATACCTCCAGGAGCAAATCAAT	211	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73506.6	1501	2e-24	197 - 256	100	60 / 60	plus	ABC21201
MLOC	MLOC_73506.2	1516	2e-24	380 - 439	100	60 / 60	plus	None
MLOC	MLOC_73506.1	1112	2e-24	380 - 439	100	60 / 60	plus	None
MLOC	MLOC_73506.7	756	2e-24	42 - 101	100	60 / 60	plus	None
MLOC	MLOC_73506.8	752	2e-24	42 - 101	100	60 / 60	plus	None
MLOC	MLOC_73506.4	1306	2e-24	241 - 300	100	60 / 60	plus	None
MLOC	MLOC_73506.3	1520	2e-24	380 - 439	100	60 / 60	plus	None
MLOC	MLOC_73506.5	1302	2e-24	241 - 300	100	60 / 60	plus	None
JLOC1	JLOC1_48946.2	1609	8e-25	232 - 291	100	60 / 60	plus
JLOC1	JLOC1_48946.1	1613	8e-25	240 - 299	100	60 / 60	plus
Harvest35	U35_32027	299	3e-25	212 - 271	100	60 / 60	plus

Contig Sequence (299 bp)

>U35_32027 299 Hv_44K_v2
CAGCATTAGGTTCCCAGCCACCGCGATGCAGCACCAAATACGGCGATGCGGCGCCGTCGC
CTTCGCCGCGCTCCGGCGGGTCCGCCACTTCCCTCGACCCACCGTCGCCGCCGCTGCACC
TCCTACGGCGGCGTGGATACGCCCTTACACTCCCCGCCTCTACTCCACCGCCGACATGAG
CCAGCAGCTGCCTGCAAACCTGGTGCAGATCATGGAGCAGAGGATGAAATTGATAGAGCA
GAAGAGCGCATACCTCCAGGAGCAAATCAATCAGCCGGCTGCCTCACCGGAGGAATACT

Homology of Contig U35_32027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None