barSeed - Barley Seed Development Database

Probe CUST_31190_PI390587928

Source Contig U35_39287

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31190_PI390587928	Hv_44K_v2	ATATTCTATTAGGATAAAGTGTTCTGTTCGATGGTGTAATGTTGGCAACTTGGCATGAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62462.1	1423	3e-21	68 - 124	98	56 / 57	minus	ABC09434
JLOC1	JLOC1_40875.3	1386	2e-21	1297 - 1353	98	56 / 57	plus
JLOC1	JLOC1_40875.2	1400	2e-21	1311 - 1367	98	56 / 57	plus
JLOC1	JLOC1_40875.1	1393	2e-21	1304 - 1360	98	56 / 57	plus
Harvest35	U35_39287	670	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (670 bp)

>U35_39287 670 Hv_44K_v2
TTTTTTTTTTTTTTTTTCATGCCAAGTTGCCAACATTACACCATCGAACAGAACACTTTA
TCCTAATAGAATATGATCGCCCGGACTAGAGTATGCAGCCGACCAACTTGATTGCTCTTT
CATTTACTCACATAGTGCTATATATACTGCTAAGAACAAACATGCTCATATATAACAGCA
CCGTGGCACTGAGGAAATATAGTGGTGATCCGTATGATTCGCTCAGGCAGACAAGAAAAT
AGTTGGAAGAATCTCAAGACTTGTAAACTAAATATTTTTCGTAGATTACTCTGCAGTTTC
TGTATGTAGCGTACTCTGAGATCTTGATGTTGCAGCTCATATATGTGTAGACTACAGCTT
AGCAAGGGTCTGGCTGTATGCTGGATCCATGCAGACAACCACCTTGCCAATGCTCCTGCC
AGAGTGGAGATGTTCTACTGCGTCCGCCACAGAAGCAACACCTACGAATTTCTTGGGGTC
AAGGGAAACCTTTAACTTCCCAGACGCATGCAGGTCAAAAAGCTTGTCAAGGTGTTTTTG
CCACAGGTCGGCATACTGAATCAGGAAAAATCAGCCACAGTTTGGCTCTTTCCAAGAATC
TTCTCACACAACCCATAGTAATTCCGTGGCATCCATCCATCCTTTCCTTTGATACTGAGA
GATCATACCA

Homology of Contig U35_39287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None