barSeed - Barley Seed Development Database

Probe CUST_31170_PI390587928

Source Contig U35_49487

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31170_PI390587928	Hv_44K_v2	CTTTGTTGTGGCATTTGTTGCAAGTGCTACGGGTAGTTGGTTTGGTTGTCGTTTACTGAA	298	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.684	1.899	1.095	0.777	0.270	0.426
Raw	44.095	76.684	38.404	44.940	3.866	8.941

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_13552.3	2072	6e-21	1783 - 1838	98	55 / 56	plus
Harvest21	ABC51227	574	3e-25	299 - 358	100	60 / 60	plus
Harvest35	U35_49487	574	3e-25	299 - 358	100	60 / 60	plus

Contig Sequence (574 bp)

>U35_49487 574 Hv_44K_v2
GTCTTGGTGGCGTCTGGGCCGGTCTCATTCTTTTTATGAGTTTGCGAGCAGTTGCTGGGT
TGTGGAGGTTAGGGAGCAAAGGTGGACCCTGGAACTTGATCTTGTCAGAGACTGACTTAC
GCGACAAAATGTGATACCCTAGATAATTTGATGAGAAGATGAAAAGATAGAAAATAAGAC
ATCTTGGCTTTCTTGTACAGTTACTTGGCAAATACATGTACAGATCCAGTGGAAGTTGCA
AACTTCATTTACTGCCAAGGCATTGTCACTAAGGTTGTAGCAGTAGAAGCACCTCTTACT
TTGTTGTGGCATTTGTTGCAAGTGCTACGGGTAGTTGGTTTGGTTGTCGTTTACTGAAGA
CGTACCACGCGAAGAACGAGTATTGTCTGTTTTCAGATATGGCCCAAGGCTTTCAAGTGT
TTGTAAGCATCATTTCGCAGCTGGAAGATGATGCTTAAGCCTTCTAGGGATGAAATATTA
CCTTATTAGATACATATTCCTGCTACCCGGAGATCTAATAATAGTGTTTTGAGCTTGGGC
TCAACCATATCTCATACCATAATATTCAGGCTCA

Homology of Contig U35_49487 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None