barSeed - Barley Seed Development Database

Probe CUST_31167_PI390587928

Source Contig U35_49492

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31167_PI390587928	Hv_44K_v2	TCCTTCTATTTTACTCACACTGAGGACCAATGCAAGGAGCCTAGAAAAAAGTAGAATGTG	483	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.236	2.282	1.058	0.805	0.308	0.349
Raw	296.396	477.148	189.802	232.764	31.405	38.485

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_37697.2	2820	8e-25	912 - 971	100	60 / 60	plus
Harvest21	ABC51234	584	3e-25	484 - 543	100	60 / 60	plus
Harvest35	U35_49492	584	3e-25	484 - 543	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_49492 584 Hv_44K_v2
ACCGGAAGTCCAAAATATGATGGTATATTTAGCCACCACAAATAAGGAGGCCAACCAAAA
CTATCTGGGTCCTGCTCCGCTGGAAGAAATGGCCAAGCAAATCTACCTAGCCGAAGGCCC
AACTGGACCTAATAAGGAGTATCTGTTCAAACTTGAGGATGCGTTAAACAAAATAGGTAA
GGTTGTCACTTATGTTTTCTTTGTTCTTATAGAAAAACTGCAAGTTTGTGCATCAGTTAT
GTGGTCATGGCAGGTGTTGTGGATCAACATGTTCAGGATTTGGCAACTGCTGTGCGCAAG
TATGCAGAGACCATTTGATAATCTCATCATAGGACCACATGAAGGTGGAATGGATTGTTG
CGGAAACATCTTTATTCTTGTATAAGGTCTGAATAGCTTGTGAGTTGTGAATATATTCAT
GACCCTCTATAGATGGCAATATAAAAATTACACAAGTAAGATGGTGATGGGAGCTATTGG
TTCTCCTTCTATTTTACTCACACTGAGGACCAATGCAAGGAGCCTAGAAAAAAGTAGAAT
GTGACANATAAAATTGAATTCCCTTGTGCGAACATAAAATTAAC

Homology of Contig U35_49492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None