barSeed - Barley Seed Development Database

Probe CUST_31161_PI390587928

Source Contig U35_8401

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31161_PI390587928	Hv_44K_v2	ACTTCTTGATCAAGTTCTTCCCCGACGTGTACAACCGGAAGCACGCGCACCTGCACGAGA	406	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377021	1913	2e-24	225 - 284	100	60 / 60	plus	ABC20294
MLOC	MLOC_76410.3	1834	2e-24	1505 - 1564	100	60 / 60	minus	ABC20294
MLOC	MLOC_76410.2	1640	2e-24	899 - 958	100	60 / 60	minus	ABC20294
MLOC	MLOC_76410.1	2654	2e-24	1754 - 1813	100	60 / 60	minus	ABC20294
JLOC1	JLOC1_50953.1	2508	8e-25	692 - 751	100	60 / 60	plus
Harvest21	ABC19742	633	3e-25	407 - 466	100	60 / 60	plus
Harvest35	U35_8401	691	3e-25	407 - 466	100	60 / 60	plus

Contig Sequence (691 bp)

>U35_8401 691 Hv_44K_v2
CTCTCCTCTACCTCCCCGTCCCTCAGCCAAGCCAGATCGGCCAGCAGGCGCTTCCCGGAG
TAGCGGCGTTGCATGCCCGTTGTTTAGTCGACGGCTACCTGCCTCCGGTTTGAATACTCC
GCGGGGCGGACTGCCAGCCCAAGAGCAGCGCAGCGCAGAGCGAGGACGGGCGTGTAAACA
GGCGAACGGGTGAGGAAGCTCCTGGTTTCGTGGTTTGACGGGAGAAGGAAGAGAGAGAGA
GAGATGGCCGGGGGTTTCGCCGGCGTCGAGGCCGGCGCCGGGAGGGCGGAGCAGTACGAG
GGGAGGATCACGCCCTACTTCATCCTCGCCTGCATCGTCGGCTCCTTCGGCGGCTCCCTC
TTCGGCTACGACCTCGGGGTATCCAGTGGTGTGACCTCCATGGACGACTTCTTGATCAAG
TTCTTCCCCGACGTGTACAACCGGAAGCACGCGCACCTGCACGAGACGGACTACTGCAAG
TACGACAACCAGGTGCTGACGCTCTTCACGTCGTCGCTCTACTTCGCCGGCCTGGTGTCC
ACCTTCGGGGCCTCCTACGTGACCAAGCGCCACGGCCGGCGCGGCAGCATCATGGTGGGC
GCCGTCAGCTTCTTCCTGGGCGGCGCCGTGAACGCGGCCGCGATGAACGTGGCCATGCTC
ATCGTCGGCCGCGTCCTCCTGGGCATCGGCA

Homology of Contig U35_8401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi4g28000.1	532	8e-69
Arabidopsis v10	AT1G77210.1	504	7e-58	\| Symbols: STP14, AtSTP14 \| sugar transporter 14 \| chr1:29009036-29010980 REVERSE LENGTH=504