barSeed - Barley Seed Development Database

Probe CUST_31160_PI390587928

Source Contig U35_8402

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31160_PI390587928	Hv_44K_v2	GAACTTTCTTAGATTGGTTTGTGCATCTGTTCGCATGTTAACCGTATGTTATCCGCCAAA	688	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.133	1.578	1.632	1.414	0.556	0.512
Raw	596.639	1313.633	1186.574	1627.699	222.295	222.709

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10511.4	1409	7e-23	1296 - 1352	100	57 / 57	plus	None
MLOC	MLOC_10511.1	1612	7e-23	80 - 136	100	57 / 57	minus	None
MLOC	MLOC_10511.2	1675	7e-23	80 - 136	100	57 / 57	minus	None
MLOC	MLOC_10511.3	1927	7e-23	67 - 123	100	57 / 57	minus	None
JLOC1	JLOC1_6885.2	1625	4e-23	1448 - 1504	100	57 / 57	plus
JLOC1	JLOC1_6885.1	1562	4e-23	1385 - 1441	100	57 / 57	plus
Harvest35	U35_8402	762	3e-25	689 - 748	100	60 / 60	plus

Contig Sequence (762 bp)

>U35_8402 762 Hv_44K_v2
GTGAGATCGGAGTATGACTTCCTCTACATCCCAATAGACTTCAGGACGAAGTACAACAAG
GGCTATGCGTTCGTCAACATGACGACGGCGACTGTAGCGCGGCGGCTCCATGCTTTTCTC
CACGGGCACCGCTGGGCGCTGGCGGGCTCTCGGAAGGTATGCGAGGTTGTGCACGCGGAC
ATCCAGGGGGTGGATGCTTTGTCAGCGCACTTCTCCAGCTCCAAGTTCCCATGCGGTAAC
AAGGACTTCCTGCCAGTGCGCTTCGGCCCGCCGCGGGACGGCCTTCGGCCGACGGTGGAG
CGTGTAATTGGCCGCACGGTGGTCCACCGTCCCGCTGATCAATCTGCTCACCCCACGCCG
CGTGCTGCACAAAGAGGAGGCAAATGGAAACCTGGTGCAGTGGGGAACAAAACTGTTTGA
GCTGGTGGCTACTGGCTAGTGATGTCTTTGCTTCGTCGCGAGGATGGAGGCCTACTCACC
TTAGGGTAGGTGCTTAGTGTGCTTGGTTACCCAAGATGATCAAGTTAGATGGTTCTTTTG
GGGCTGCAGGAGTATCTTCTAGTGTCTGTATGACTGTATCCTACCTTGGAGATGTTGGCT
TCATTTGTCTTCCCTAGGTAGCAGCAATGCTTGGTGGTTCTGCCATCCGATTTCCTTTGA
GTTGTCACTAACTGTACTCATCTGCCCTGAACTTTCTTAGATTGGTTTGTGCATCTGTTC
GCATGTTAACCGTATGTTATCCGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g36020.1	289	1e-57
Arabidopsis v10	None