barSeed - Barley Seed Development Database

Probe CUST_31157_PI390587928

Source Contig U35_8405

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31157_PI390587928	Hv_44K_v2	GTGAGAATCCATGTCATGAATAATTCACAGGGGCTGGAACGCTGTTCCGGAGTGAAAAAA	509	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	18.318	11.208	1.889	0.665	0.137	0.278
Raw	1177.748	992.904	177.159	101.811	6.794	15.772

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14841.1	985	9e-22	283 - 337	100	55 / 55	minus	None
JLOC1	JLOC1_10138.1	985	5e-22	283 - 337	100	55 / 55	minus
Harvest35	U35_8405	580	3e-25	510 - 569	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_8405 580 Hv_44K_v2
GCAGCCGCCACCGCCGCCGGCGACGCAGACGTGCCCGGTGGACACGCTGAAGCTCGGGGC
GTGCGTGGACCTGCTGGGCGGGCTGGTGCATATCGGGCTGGGCGACCCGGTGGTGAACCA
GTGCTGCCCGCTGCTGGAGGGGCTGGCGGAGCTGGAGGCGGCGGCGTGCCTGTGCACCAC
CATCCGGCTGAAGCTCCTCAACATCAACCTCGTCCTGCCCCTCGCCGTCCAGCTCCTCCT
CACCTGCGGCAAGACCCCGCCCCGCGGCTACACCTGCTCCATCTAATTCTAACCAAGCTA
AGCTCGGTGAGTCAGTGTACTTGGAGATGGATGGATGGATCGACATGAGAGGGTGTCGGA
CGTCGTCGGCTACGAGCTACTAGCTAGTAGCGAGCAAGAAGAAAGATCGATCAGCTAGCT
ATGAATGGATCGATCGATGAGTGTTTTTCTTTTTTGTGATTTTTATTTTGTGTTTGGCTA
GGTCTGTCTGTTGTGGTTTGATGCAAGAGGTGAGAATCCATGTCATGAATAATTCACAGG
GGCTGGAACGCTGTTCCGGAGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_8405 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None