barSeed - Barley Seed Development Database

Probe CUST_31153_PI390587928

Source Contig U35_8409

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31153_PI390587928	Hv_44K_v2	GTTGTTGTGGATGTTGTAAAACAATCACCCATGTTCAATACAGTTCAGTTCGTCTGCAAA	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4183.1	1658	3e-21	1602 - 1658	98	56 / 57	plus	None
JLOC1	JLOC1_2565.2	1742	5e-22	1659 - 1716	98	57 / 58	plus
JLOC1	JLOC1_2565.1	1674	5e-22	1591 - 1648	98	57 / 58	plus
Harvest21	ABC48588	418	2e-22	348 - 405	98	57 / 58	plus
Harvest35	U35_8409	705	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_8409 705 Hv_44K_v2
GGATCCTACATAGCTTAGTTGACATTGACTGGATAACCACTGTCTTGACAAAGATTGAGT
TGATGAATGAGTTTGTTTCTGGCTGGTTAGAAATCTCAGACCATGTCATCTCAGTGGTTC
AGGACGACAAGTATAGCTCGGGTCTGTGGGCTGTGAAGAGGAAGCTTATAGAAGTGACTG
GAAAGGCCTTGGATGCTGTTGGCTATGGCTCTGTGGTTCTCCCATCAACATCCAGAACGC
ATCTTGTGAAGACATGGCTCCCGTACATCCGAACGACAAAGCGCTTGCTTGATGGTAAGA
CAAAAGACGATGCATTTCCTCAGATGGATGCGAACTTGTGCCAGAACATTGAGAGTGCAA
TCGTTTCGATGGTTTTAGCATTGCCTTCGGGTGACCAGTCGGATATCCTGTCGGACTGGA
TGCAGAAAGCAGACCAGTTCAGATATCCTGACCTCACTGAGGCATTTGAGATGTGGTGTT
ACCGCAGCAAAACAGCAATCAGACGGCTGAATGGGGCGATAGATAAGGCCGGCAACCCTA
TCAGCTTGTAAGGCTACCATTGATTTAATTGTAGACTGTAAGAGTGATATTAGCCGGTTA
TACCAACCAAGTTCTCATTGTTGGATGTTGTTGTTGTTGTGGATGTTGTAAAACAATCAC
CCATGTTCAATACAGTTCAGTTCGTCTGCAAAAAAAAAAAAAAAG

Homology of Contig U35_8409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g03840.1	434	3e-90	protein\|H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed
Brachypodium v1_2	Bradi1g49730.1	433	5e-101
Arabidopsis v10	None