barSeed - Barley Seed Development Database

Probe CUST_31152_PI390587928

Source Contig U35_8410

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31152_PI390587928	Hv_44K_v2	AAACTAATAGAGGGCATGGGAAGTCTCATCCTTCTTGGCGCAGAAGGAATACAGATGACT	1271	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.349	1.043	1.287	0.922	0.488	0.378
Raw	253.851	278.397	330.601	354.047	69.091	58.430

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5444.5	4241	2e-24	2925 - 2984	100	60 / 60	plus	ABC10564 ABC10565
MLOC	MLOC_5444.4	4907	2e-24	3591 - 3650	100	60 / 60	plus	ABC10564 ABC10565
MLOC	MLOC_5444.3	5086	2e-24	3777 - 3836	100	60 / 60	plus	ABC10564 ABC10565
MLOC	MLOC_5444.2	5081	2e-24	3765 - 3824	100	60 / 60	plus	ABC10564 ABC10565
MLOC	MLOC_5444.1	5105	2e-24	3766 - 3825	100	60 / 60	plus	ABC10564 ABC10565
JLOC1	JLOC1_3505.6	4613	8e-25	3192 - 3251	100	60 / 60	plus
JLOC1	JLOC1_3505.5	4620	8e-25	3199 - 3258	100	60 / 60	plus
JLOC1	JLOC1_3505.4	6360	8e-25	5038 - 5097	100	60 / 60	plus
JLOC1	JLOC1_3505.3	4857	8e-25	3535 - 3594	100	60 / 60	plus
JLOC1	JLOC1_3505.2	5091	8e-25	3769 - 3828	100	60 / 60	plus
JLOC1	JLOC1_3505.1	4994	8e-25	3672 - 3731	100	60 / 60	plus
Harvest21	ABC18238	1372	3e-25	1272 - 1331	100	60 / 60	plus
Harvest35	U35_8410	1372	3e-25	1272 - 1331	100	60 / 60	plus

Contig Sequence (1372 bp)

>U35_8410 1372 Hv_44K_v2
GAGGGAGTTGGCTGTACATCGTGCCAAACAATTGCAAGCTGAGGAAGAAGAACGGACAAA
GCGACAAAAGGCAAAAGCTCTTGCAAAATTGGAGGAGCTGAACAAGCGTTCATCAGTACA
TCAGATGAACTCCAGTGGTCCACCACCAGAAAATGACGACGTGCGTAATAAGCAGAAGGC
CGGACTTGATGGGACTACTGAACCTGCGTCTTCAACTGCTGAATCACATGATGTTACTGC
ATTGGATAATGTTAGTATTCTTCAGCCACCAAATGAACCCAAGGATACTGCCGTTCCTGC
ACAGCTCACGTCTACTCTACTACATGCTGCGGGTACAGGTAAAGATCCTTCTGGTCATAA
CACTTCAGCCTCAGGCATGAACACACAGAGCAACATGATGGAGCATATAGCCCATAAAAG
TGTATCACAGTCACATGATGCCAGTGTTCGAAAGCCTAGGCAAGGCTACAAAAAAAGGCA
TACTGTTTCAGAGGATAAAATTCCTGGTGAGAAGTCAAGTGTGGCAGCTAACACAGAAAA
TGTGAAGAAAGCTGTTCAGGTTTCTTCAGACACATCATCTGCTGTTGTTACATCACATGA
TGATCCCCCAGCCCACAACAAGAAGAGTGCCAGGAACTCGAGAAATAAGAAAAAAATTGA
TGATGCTCCAGCTACTTCTAAATATCCACCCATGGTTCTTAGTCAGCAGAATACACCAAG
CATCTCCAGTGAGCCAAAAATAAAAACCGCTGGTGTTATCATTAGTAGTTCTATACTTCC
TGCTGAAAATACCGTGCTTACTGTTGGAAGTATAACCGTGGGTGGTATTTCATTTGGATC
TTTCAACCAGGAGCGCCTGAAATTACCAGAGGAAGCTCAGAGCACTGCAAATAGCCGGCC
AAAACCTCAGCAAGCAAAAGGATCGAGAAAGATTCAACATGCTACCCGACCTGTCGAGAA
GCCACATGGGAATGAGAGTGTTGTCTGGGCACCGGTTAAGCCATCAGGGTGGAATGAACC
ATCTGAGGAAGCTGATGCAGCAGTAGCAGCCAGGCCTAAACCAATTGGAAAGTGCACCAC
CGATGGGGAGAATGTCACACGAACTAAGAGAGCTGAAATGGAAAGATATGTGCCTAAGCC
ACTGTCCAAAGAGCTTCAACAGCAGAATTTAGAACAAAATTTACCTGTAGAAAAATCCTC
TGTGGAGAACAAGAGTAATGATAATGAGAAGTTAACCGCTGCTAAAGAGCCCAAGAAATG
GGAGGACAAAAAAACTAATAGAGGGCATGGGAAGTCTCATCCTTCTTGGCGCAGAAGGAA
TACAGATGACTCAGCTTCGGTGGTACCAATACCTTCTGAGCGAGCAGACAGC

Homology of Contig U35_8410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g37860.1	1461	4e-145	protein\|expressed protein
Brachypodium v1_2	Bradi4g04400.1	1492	1e-178
Arabidopsis v10	None