barSeed - Barley Seed Development Database

Probe CUST_31146_PI390587928

Source Contig U35_8416

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31146_PI390587928	Hv_44K_v2	GTGGAAGAAACTACGTAGCTGTTTAATTTTCGTTTTATGTCTCATGTAACGGGAGAATAA	790	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16010.1	1272	2e-24	291 - 350	100	60 / 60	minus	ABC23672
MLOC	AK354135	903	3e-22	795 - 853	98	59 / 60	plus	ABC23672
JLOC1	JLOC1_11012.1	1171	8e-25	241 - 300	100	60 / 60	minus
Harvest21	ABC23672	610	3e-25	489 - 548	100	60 / 60	plus	ABC23672
Harvest35	U35_8416	912	3e-25	791 - 850	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_8416 912 Hv_44K_v2
TACTCGCTCACTGACTCAAGGGAGCTACTCCACTCCACTCCACTCCACTAGTTAGCCACA
CACCCACCACACAGACGTACCAAGCACAGTACAGTAGAGAGCGGAGCGGAGCCATGAGCA
AGGAGCAGCAGCACAGGCACGAGCACCATCTGCGGCGCTGCTGCGGCGGCCTGGCGGCGT
GCCTCCTGTTCCTGGTCGTCGCCGTCGCGCTCACCGCGCTCATCGTCTACCTCGCGCTCC
GCCCCGCCAAACCCTCCTTCTACCTGCAGGACCTGCAGCTCCGCTCCGTCAGCTTCGGGG
ACCCGTCCCTGTCCGCCACGGCGCAGGTCACGCTCGCCTCCCGCAACCCCAACGACCGCG
TCGGCGTCCTCTACCGGCGCCTCGACGTCTTCGTCACCTACCGCGACGAGCCGGTCACGG
TGCCGGTCTCGCTGTCGCCCGCGTACCAGGGTCACCGGGACGTCACCATCTGGTCCCCCG
TGCTGTCCGGGGAGTCCGTGCCCGTGGCCGGGTTCGTCGCCGACGCCATGAGGCAGGACA
TCGCCGCCGGGTACGTGGCGCTGCAGGTCAAGGTGGACGGCCGCGTGAGGTGGAAGGTCG
GCAGCTGGGTCTCCGGAAGCTACCACCTCTTCGTCAGCTGCCCCGCCGTGCTCGCCGCCG
GCCCTGGCGGCATGCCGCTCGGGGGCGGCCCAAACGGCACCTCCGGCCGCGCCGTGGCGG
CGCTCAAGTTCGCGCAACCGACAGGGTGCACCGTCGGCACGTGATGGAAATTACGTACCG
TACATTGAAGGTGGAAGAAACTACGTAGCTGTTTAATTTTCGTTTTATGTCTCATGTAAC
GGGAGAATAAAATGTACTACAATTTTTGAATTAACAATTGCAATTTGCATCATGCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_8416 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g33550.1	225	7e-92	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	Bradi3g45160.1	219	2e-95
Arabidopsis v10	None