barSeed - Barley Seed Development Database

Probe CUST_31141_PI390587928

Source Contig U35_8421

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31141_PI390587928	Hv_44K_v2	TTCTAGTGTTTGATCAGATGGAGAACAGGAGCCTGAAAGAATGCCTCCACGATCCACTTA	301	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.155	0.432	1.451	1.707	0.888	1.042
Raw	9.271	41.764	120.664	229.793	41.118	51.548

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28868.2	1440	2e-24	666 - 725	100	60 / 60	minus	None
MLOC	MLOC_28868.3	1336	2e-24	666 - 725	100	60 / 60	minus	None
MLOC	MLOC_28868.1	1524	2e-24	787 - 846	100	60 / 60	minus	None
JLOC1	JLOC1_19303.1	1337	8e-25	544 - 603	100	60 / 60	plus
Harvest35	U35_8421	987	3e-25	302 - 361	100	60 / 60	plus

Contig Sequence (987 bp)

>U35_8421 987 Hv_44K_v2
CGGATGGGCTGCCTCCACCAGCGGCTCGGCCGCTCGCGTGCTCTGCCGTTCGTGAGGAGG
TTCAAGCCGAGGGAGATCGAGGCGGCCACCAGCGGCTTCAGCACGGCCCTCGAGACAGGC
GGGCCTCGCGGCACGGCGTACCGCGCCCGCTTCGCTGATGGCCTCGTCGCGACGGTGCGC
CGTGCGGGCGGCGGCGACCCGGGCCAGGAAGATCACTTCTACCGGGAGCTGCAGCTGCTC
GGCCGCCTCAACCACCGACACGTCGTCAGGCTCCGCGGCTTCTCAGAAGGACACACCAGG
TTTCTAGTGTTTGATCAGATGGAGAACAGGAGCCTGAAAGAATGCCTCCACGATCCACTT
AGGACGCCACTCAACTGGAGGACCCGGTTGCAGGTTGCCATAGATGTGGCAGCAGCCCTG
GAGTATCTCTACTACTTCTGTGACCCACCGGTGTTCCACGTGACGGTGAACTCGAGCAAC
GTGATGATGGATGCTGATTTCGTTGCCAAGGTGAGTCACATTGGTACGTTCCAGGCGACG
CTATGTATCCCGGACCGCCAATAGATCGGTCGAGCAACTGAATTTGTACTCACTTTCAGC
TCTCGGACGTCAGTGTCGTCGGTCACGACACTTCGGAAGAATCCCACGCCGAAGGTTCTC
TTGGCCACTTTTTTTCATCGCTTTGTCTGACACGTCTGGCATGGCACTGTCACTGGCACT
GAAACTAGAGCCTGCGTGTTCTTTCTTCAGAGCGAATTCAGCAGAGGCGGGCGGAGCTGG
TGTTCCAGTACGGCGTGTTGCTCCTGGAGCTCGTGACCGGACAGTCGCCCGGGGGCGGCA
ACGGGGAGCTCGTGCGGTGGGTGCAGGAGCCAGGGTTCGCCGGATCCATGCAGAGGATGG
TGGACGCGGATCTCGGCGGCACATACGACGCCGGNGAGCTCCGGGACCTCGTGATAGTCG
CGAGGCTCTGCACTAGGCCTGGCAGCG

Homology of Contig U35_8421 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06570.1	306	7e-89	protein\|receptor protein kinase CRINKLY4 precursor, putative, expressed
Brachypodium v1_2	Bradi1g57100.1	298	2e-103
Arabidopsis v10	None