- Probe CUST_31135_PI390587928
- Source Contig U35_8427
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31135_PI390587928 | Hv_44K_v2 | TGCACGATACTATTACCGTTATCTATATTGGGTGTAATGCTTGTTCTGTTAAACAGTTTG | 420 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.239 | 5.437 | 1.088 | 0.733 | 0.285 | 0.511 |
| Raw | 254.409 | 364.270 | 60.390 | 71.261 | 8.534 | 17.578 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364919 | 1571 | 2e-24 | 1498 - 1557 | 100 | 60 / 60 | plus | ABC20427 ABC40488 |
| Harvest21 | ABC20427 | 513 | 3e-25 | 422 - 481 | 100 | 60 / 60 | plus | ABC20427 |
| Harvest35 | U35_8427 | 524 | 3e-25 | 421 - 480 | 100 | 60 / 60 | plus |
Contig Sequence (524 bp)
>U35_8427 524 Hv_44K_v2 GCATGGCGTTCCACCCGGAGAGGGAGGTGGTGTACCTGTGGACGCCGTCGAAGCTCATTG CGTTAACATGGAGCAGAGGCGCATCGAGGAGGAGTGCGTGTTCGGGTCCGGGAAAGGAGA CACGCAGCTCATACAAATCTGGCTGTTTCCGTTCTCGCGCCATTTGGCCAGCTGCTTGGC CTGAGTGGCGATCCCACACACCATACGAATGTGATCTTCTCCAAGAATGTGAGTCCGTTT ATTGTTTACCAGTCCACACGAATGTTCGTAGTAGCGTAAAACACCACACGAAAAAGATAT CACTCCATCCGTCCCCAAAATAAGTGTCTCAACTTTAAACTAGCTCTAGTATAAATTTGT ACTAGCTTAAGACAGTTATTTTAGAACGGAGGGAGTATGTAGCAAAGTCCAAATGTGGTA TGCACGATACTATTACCGTTATCTATATTGGGTGTAATGCTTGTTCTGTTAAACAGTTTG TTCAGTTATTTGCCAGCGGCCGCTCGAGCATGCTATGAAAAGGG
Homology of Contig U35_8427 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |