barSeed - Barley Seed Development Database

Probe CUST_31133_PI390587928

Source Contig U35_8429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31133_PI390587928	Hv_44K_v2	ATTAACGCCACCATGGCGTGCCAATCCACCCACCCTACCAGGTCCCGTGCTTCTTAAAGC	87	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360828	1943	2e-24	131 - 190	100	60 / 60	plus	ABC08523 ABC14249
MLOC	MLOC_59706.3	590	2e-24	519 - 578	100	60 / 60	minus	None
MLOC	MLOC_59706.1	1412	2e-24	1146 - 1205	100	60 / 60	minus	None
JLOC1	JLOC1_38869.1	876	8e-25	171 - 230	100	60 / 60	plus
Harvest21	ABC17836	559	3e-25	88 - 147	100	60 / 60	plus
Harvest35	U35_8429	560	3e-25	88 - 147	100	60 / 60	plus

Contig Sequence (560 bp)

>U35_8429 560 Hv_44K_v2
CGTCACCGCCACCGCCACCACCAGCGCGCACCTCCTCTCCGGTGGCCGCAACCGCAACCG
TCGCAGCCGCCCACGGCGCATGTCAGTATTAACGCCACCATGGCGTGCCAATCCACCCAC
CCTACCAGGTCCCGTGCTTCTTAAAGCCCAGGCCGGCGACGGCGATGGCGACGGAGGGGA
CGAGCAGGAGCTCCTCCTGGCCTCGCGGCGACACGCGTAAGAAGCCGACCGCCTTCCTGC
TCCACACGCTGCTCTTCATGTGCGTGGCATTCCGCGTAGCCGCGGCGCTCATCCGCGTTT
CATACCACCTCGCCGCCGGCAGCGTCCTCGGCGTGGCCAGGGTCCTCTTCGCGGCGGCGA
ACGACCGGTGCATGCGGTGCATGAACCAGGCGGCGCTCGGCCGCAGCGCCACGGGCACCT
TCTGCGGGGACTTGCTCGTGGGAGCCATGGCCAACTCGTGGAGGGTGCTCATGCAGGGGC
TCGCGTCGCTGATGTTCCTCTGCGCGCGCGCCGACGAGTACGTCCGGCCGCCGCCGAGCC
CGCTTGTGCTGACGCCACAC

Homology of Contig U35_8429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None