barSeed - Barley Seed Development Database

Probe CUST_31124_PI390587928

Source Contig U35_8438

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31124_PI390587928	Hv_44K_v2	CCCACGCCCTCTTCTCCACCATCGACTCCGACGACTCCGCCCTCGAGTCCTCCGCTCCCG	344	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365127	1498	2e-24	319 - 378	100	60 / 60	plus	ABC01615 ABC13527
MLOC	MLOC_77502.1	1827	2e-24	476 - 535	100	60 / 60	plus	ABC01615 ABC13527
JLOC1	JLOC1_51687.1	1840	8e-25	484 - 543	100	60 / 60	plus
Harvest35	U35_8438	404	3e-25	345 - 404	100	60 / 60	plus

Contig Sequence (404 bp)

>U35_8438 404 Hv_44K_v2
CTTCTCCAGCCTTCCCTTTCCTTCCCACGCGAACAAAAGAATCCAAAAATCCCCAAATCC
CCCCCTCCCCTTCCACGCGTGCTACGCCCTCAATCCCCAATTCCCCACGCGGCCGGCCTC
CTCACCAGCTCCCCCCAGCTCCCCCCAGCTCGGATCTCCGCCGCCAGCAGCTCCGGCGTA
AGAGGCCATGGAGTGCGAGCCCGAGGAGCTGCAGTTCCTGGGCCCCGTCGGCATCTACCG
GGAGTCGGTGGCCATCCTGCGCGCACACCGCCCGCTCTACGCCCGCATCGCCGCCGCCTT
CGTCCTCCCGCTCTCCGCGCTCTTCCTCGCCCACATCGCCATCTCCCACGCCCTCTTCTC
CACCATCGACTCCGACGACTCCGCCCTCGAGTCCTCCGCTCCCG

Homology of Contig U35_8438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None