barSeed - Barley Seed Development Database

Probe CUST_31120_PI390587928

Source Contig U35_8443

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31120_PI390587928	Hv_44K_v2	AACGCACTTCCGAGTAGAGTTATTACTGCGCCTTTTCCAGTAACAGGGTTTGTTTGCAAA	575	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56888.5	2637	2e-23	2521 - 2578	100	58 / 58	plus	ABC22098
MLOC	MLOC_56888.2	1298	2e-23	178 - 235	100	58 / 58	minus	ABC22098
MLOC	MLOC_56888.1	1151	2e-23	178 - 235	100	58 / 58	minus	ABC22098
MLOC	MLOC_56888.7	849	2e-23	52 - 109	100	58 / 58	minus	ABC22098
MLOC	MLOC_56888.6	853	2e-23	52 - 109	100	58 / 58	minus	ABC22098
MLOC	MLOC_56888.3	1407	2e-23	136 - 193	100	58 / 58	minus	ABC22098
MLOC	MLOC_56888.4	1335	2e-23	136 - 193	100	58 / 58	minus	ABC22098
JLOC1	JLOC1_36816.5	1466	1e-23	1130 - 1187	100	58 / 58	plus
JLOC1	JLOC1_36816.4	1423	1e-23	1087 - 1144	100	58 / 58	plus
JLOC1	JLOC1_36816.3	1443	1e-23	1107 - 1164	100	58 / 58	plus
JLOC1	JLOC1_36816.2	1332	1e-23	996 - 1053	100	58 / 58	plus
JLOC1	JLOC1_36816.1	1089	1e-23	753 - 810	100	58 / 58	plus
Harvest21	ABC22098	1158	3e-25	1088 - 1147	100	60 / 60	plus	ABC22098
Harvest35	U35_8443	644	3e-25	576 - 635	100	60 / 60	plus
Harvest35	U35_8444	1320	4e-24	1077 - 1134	100	58 / 58	plus

Contig Sequence (644 bp)

>U35_8443 644 Hv_44K_v2
GACAGATTCTGTTAGCCATCATCATTTCGAGCTATGTCAAGTTATTTCTTCTGACAATGA
TGGTTTGGGAGTTTCCATCATCTGCTATATTCATCGTCGAAACATTTGTTCTCTCATCAA
ATGTTGTAGCCCTGAGAGTGGTGACACGGTTCCCAAAAGCCCACTGCGTTGGGGTCTGCT
TCATGGCGCACGCGGCAAAGCACTTGACGGAACGGTGGCTCATGTGGACACCATGAACAT
GAATTTATCAAGACTTGCCGCCGTCTTACTCCAAGTGTTCGTGCAGAGTGGAACTGGACC
ATGCCGGAACTGGAAAACGGGGACCCATCCTGCTGGCCTCTGTACTGAGGCCCTGCAGGC
TGAGCGATCGCGGTCCGGTGAGCGTACGCCTGAGAGACTGAAGAGGCAGTCTGTAGAGAT
GGGCCGTCACTTTCGCCTACTTATGGCCCAAGTAGGAGTAGCTACTTACTTGCCCTGTTC
ACGCCCGGAAGTGCGTCAGCCAGCTGATAGGGCCCCTCTACCTTCTGATTCTTTCTCAGT
TGTACACCCGTTGTAGAACAAAGAGCTTTTGGGTGAACGCACTTCCGAGTAGAGTTATTA
CTGCGCCTTTTCCAGTAACAGGGTTTGTTTGCAAAAAAAAAAAA

Homology of Contig U35_8443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None