barSeed - Barley Seed Development Database

Probe CUST_31119_PI390587928

Source Contig U35_8444

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31119_PI390587928	Hv_44K_v2	TTCATGTGGTTTAGAGCCCTTTAGTTTGCATGATGAATGGATCCGTATTCCTATAAAAAA	1250	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.741	1.537	1.557	0.854	0.280	0.373
Raw	43.917	61.982	53.602	46.049	4.385	7.038

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56888.2	1298	9e-22	7 - 61	100	55 / 55	minus	ABC22098
MLOC	MLOC_56888.1	1151	9e-22	7 - 61	100	55 / 55	minus	ABC22098
JLOC1	JLOC1_36816.5	1466	5e-22	1304 - 1358	100	55 / 55	plus
JLOC1	JLOC1_36816.4	1423	5e-22	1261 - 1315	100	55 / 55	plus
JLOC1	JLOC1_36816.3	1443	5e-22	1281 - 1335	100	55 / 55	plus
JLOC1	JLOC1_36816.2	1332	5e-22	1170 - 1224	100	55 / 55	plus
JLOC1	JLOC1_36816.1	1089	5e-22	927 - 981	100	55 / 55	plus
Harvest35	U35_8444	1320	3e-25	1251 - 1310	100	60 / 60	plus

Contig Sequence (1320 bp)

>U35_8444 1320 Hv_44K_v2
GCGCTGCAGAGCTCGCGCGGGCGGATTCAGCGCGATGGGGGACGACGGGGCGGAAGGGGA
GGCGCCGCGCTGCGTCGGCTGCGGCCGGCGCGTGAGGACGCTCTTCGTGCAGTACTCCCC
GGGCAACATCCGTTTGATGAAATGCGATGTCTGCAAGGCTGTCGCTGATCCCTACATCGA
GTGTGAATTCATGATTATCTTGATCGATCTGATTCTACACAAGACCAGGGCATACCGACA
TCTACTGTTCAATAAGCTGCACATTGGTTCATCTCTTGACAAGGGAATACTGTGCCAGTT
CATTGTGATGCATATCGTTCTTGACGCTTTCAGAATATCAGTTTCAAAAAACAACAAAGC
TGATGGAGATTCTTCCAGGAGCACATTGTCCACAATTTGCAATTGCAGCGAGGTTCTGGG
TGATGCATTGTTAGGAAACATCATATTTACGGCCATGTTACTCCTGGGAGTACGTTATAT
CCTCAAATTTTCGTTTGACATTACAAGGTATCGACAGATTCTGTTAGCCATCATCATTTC
GAGCTATGTCAAGTTATTTCTTCTGACAATGATGGTTTGGGAGTTTCCATCATCTGCTAT
ATTCATCGTCGAAACATTTGTTCTCTCATCAAATGTTGTAGCCCTGAGAGTGGTGACACG
GTTCCCAAAAGCCCACTGCGTTGGGGTCTGCTTCATGGCGCACGCGGCAAAGCACTTGAC
GGAACGGTGGCTCATGTGGACACCATGAACATGAATTTATCAAGACTTGCCGCCGTCTTA
CTCCAAGAGTGGAACTGGACCATGCCGGAACTGGAAAACGGGGACCCATCCTGCTGGCCT
CTGTACTGAGGCCCTGCAGGCTGAGCGATCGCGGTCCGGTGAGCGTACGCCTGAGAGACT
GAAGAGGCAGTCTGTAGAGATGGGCCGTCACTTTCGCCTACTTATGGCCCAAGTAGGAGT
AGCTACTTACTTGCCCTGTTCACGCCCGGAAGTGCGTCAGCCAGCTGACAGGGCCCCTCT
ACCTTCTGATTCTTTCTCAGTTGTACACCCGTTGTAGAACAAAGAGCTTTTGGGTGAACG
CACTTCCGAGTAGAGTTATTACTGCGCCTTTTCCAGTAACAGGGTTTGTTTGCAGGTTTT
CACTTTTCACGGACACTTTCTCTCTACTGACGATGTGCGTTCGTAGAGTGCTGAGCCTTT
TCTAGTACGCATCTACAGGCCTCCTTTGGTTTGCAAATTTTTTGGTAGTATTCATGTGGT
TTAGAGCCCTTTAGTTTGCATGATGAATGGATCCGTATTCCTATAAAAAAAAAAGAAAAA

Homology of Contig U35_8444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57090.1	239	5e-121	protein\|arv1, putative, expressed
Brachypodium v1_2	Bradi1g06590.1	241	5e-136
Arabidopsis v10	AT4G01510.1	228	1e-58	\| Symbols: ARV2 \| Arv1-like protein \| chr4:642755-644190 FORWARD LENGTH=228