barSeed - Barley Seed Development Database

Probe CUST_31114_PI390587928

Source Contig U35_8449

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31114_PI390587928	Hv_44K_v2	ACTTAACTTCTGTGTGGAATCGGTGCGCTGCTACAGCGATCAATTGCGTTTTGGATGATT	472	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.874	5.174	1.089	0.830	0.323	0.253
Raw	418.698	533.117	91.776	113.872	14.707	13.224

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357921	2137	2e-24	1180 - 1239	100	60 / 60	plus	ABC39733 ABC42189
MLOC	MLOC_10665.1	1426	2e-24	1270 - 1329	100	60 / 60	plus	ABC39733
MLOC	MLOC_10665.2	2427	2e-24	1513 - 1572	100	60 / 60	plus	ABC39733 ABC42189
JLOC1	JLOC1_6995.1	2289	8e-25	1315 - 1374	100	60 / 60	plus
Harvest35	U35_8449	556	3e-25	473 - 532	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_8449 556 Hv_44K_v2
CTCGCCGGCATCATTTTCCTGCAGCCGTACTTCGGCGGCGAGGAGCGCACGGAGGCGGAG
CAGAGGCTGGAGGGCGTGGCGCCGGTGGTGAACATGCGGCGCTCCGACTGGGCGTGGAGG
GCGTTCCTGCCGGAGGGCGCGGACCGGAACCACCCGGCGGCGCACGTGACGGGCGAGGCG
GGACCGGAGCCCGAGCTGGCGGAGTCGTTCCCGCCGGCGATGGTGGCGGTCGGCGGGCTG
GACCCGCTGCAGGACTGGCAGCGGCGGTACGGCGCCATGCTGCGGCGGAAGGGGAAGGCG
GTCAATGTGCTGGAGTTCCCGGACGCCATCCACGCCTTCTACTGCTTCCCGGAGCTCCCC
GACTCCGGCAGGCTCGTGGAGGAGATGAGGGCGTTCATCGGGACCAACGCGCCCACTCAT
CACCCCGATGCTTGAGAAGATCTGCGTGATGCGCGCGAGGGGTGTAATTTGAACTTAACT
TCTGTGTGGAATCGGTGCGCTGCTACAGCGATCAATTGCGTTTTGGATGATTGGGTTGGA
AAAAAAAAAAAAAAAA

Homology of Contig U35_8449 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g20200.1	361	6e-69	protein\|gibberellin receptor GID1L2, putative, expressed
Brachypodium v1_2	Bradi1g19750.1	361	3e-81
Arabidopsis v10	None