- Probe CUST_31112_PI390587928
- Source Contig U35_8451
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31112_PI390587928 | Hv_44K_v2 | CAATAGAAGTTAGTTTTGGCACGGCCATGCAACTTCATGATTCCATCAATATGGATGCTA | 356 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.574 | 4.770 | 1.244 | 0.581 | 0.175 | 0.186 |
| Raw | 1683.100 | 3183.727 | 762.098 | 549.323 | 61.495 | 70.346 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC31668 | 459 | 3e-25 | 350 - 409 | 100 | 60 / 60 | plus | ABC31668 |
| Harvest35 | U35_8451 | 466 | 3e-25 | 357 - 416 | 100 | 60 / 60 | plus |
Contig Sequence (466 bp)
>U35_8451 466 Hv_44K_v2 GGAATATCTAGCAAGAGGAGGAAGAGAAATAGGTACCCACACTTCTGATGGCGCTTATCA AGAACAGCGCAAATGCCCTTTGCTTGGTAATTCTTCTGATGTCTACCACTTTGTTGCCAT GCGAGGCAACTAGAAGAAACAAAGGTACAACTTCACAGATTGATGTGTGCAAACCTGAGC GCTTATGCGAGAACCCGATAGGATACAATGTTACCTTGTGTAAGGCTTCATGCGAATGGT CTGGCTACAGTTTCTACAACAGCTATTGTGAGAAGGGTAAATGCTGTTGTGCTTCCTAAG GAGTTAAATGATGTGCCAAAATGCCATGATTGTATGATATGGTGAATTTCAATAAACAAT AGAAGTTAGTTTTGGCACGGCCATGCAACTTCATGATTCCATCAATATGGATGCTATCCA AATTATTTTGATATAAAAAATAATGTTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_8451 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |