barSeed - Barley Seed Development Database

Probe CUST_31100_PI390587928

Source Contig U35_8464

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31100_PI390587928	Hv_44K_v2	TAATCCAAGATTAAATTCTACCAGCCATCTCGGGGAAGCTGTAAAGCAGCTTGCACCAAC	1168	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373522	4270	2e-24	3007 - 3066	100	60 / 60	plus	ABC13017
MLOC	MLOC_13587.1	1516	6e-24	284 - 342	100	59 / 59	plus	ABC13017
JLOC1	JLOC1_9209.1	1725	3e-24	303 - 361	100	59 / 59	plus
Harvest21	ABC18415	1230	3e-25	1169 - 1228	100	60 / 60	plus
Harvest35	U35_8464	1230	3e-25	1169 - 1228	100	60 / 60	plus

Contig Sequence (1230 bp)

>U35_8464 1230 Hv_44K_v2
GCCCCGCCGCGCCCGCCGTCGAGATCCCCGTCACGTGCTACCAGATCCTGGGCGTCACGG
AGAAGGCCGAGAAGGACGAGATCGTCAAGTCGGCCATCGAGCTGAGGAAATCGGAGATCG
AAGATGGGTACACGGAGGAGGTGTCCACCTGCAGACAGGCTCTGCTGCTGGTCTTGGACA
TTGGTCAGGCAGCTCTACGACGCCCTGATTCTAAGCCATATGCTCACGATGTACTTCTTG
CAATGGCACTAGCTGAATGCTCCATTGCAAAAGCTAGCTTTGAAAAAAGTAAAGTATCTC
TTGGCTTTGAGGCTCTAGCACGTGCTCAATATCTTTTGAGGAAAAAACCATCTTTAGAGA
AGATGCCTCTTCTTGAGCAGATCGAAGAATCACTTGAAGAGCTTGCACCAGCTTGCACTC
TAGAGGTTTTAAGCCTGCCCCGTACACCTGAAAATTCTGAACGCAGGCGTGGTGCTATTG
CAGCTCTCTGTGAATTGCTTGGACAGGGACTTGATGTCGAGTCATCTTGTAGAGTTCATG
ATTGGCCTTATTTCCTGGGCCAGGCAATGGACAAGTTATTAGCCACTGAAATCGTGGAAC
TACTTTCTTGGGACTCTTTGGCTACAACTCGTAAAAACAAAAAATCATTGGAGTCCCAGA
GCCAGCGGGTGGTAGTTGACTTCAACTGTTTCTACAGGGCAATGCTTGCACACCTTGCAT
CTGGATTTTCAACCCGGCAGACTGAGTTGATAAGTAAAGCTAAAACCATCTGTGAATGCC
TTGTTGCATCTGAGAACACCGACCTGAAATTTGAGGAATCGTTTTGCTCGTTTCTTCTTG
GAGAGGAATCTGGCACCACAGTTTTTGAAAAGCTTCAGCAGCTTCAAAGTAATGGAAGTT
CCAATTCAAGGAATTATGGGTTAGCTAAAAAGAAAGACAGCAGTGACAAGGTTACTGTCA
ACCAGTCACTGGAACTGTGGCTGAAGGATGTGGCACTTTCTCGTTTTGCAGATACAAGAG
ATTGTCCGCCATCCTTGGCAAACTTCTTTGCTGCTCCTAAGCGCCTCATTAGCACTTCCA
AGCAAAAACTAGGAGCCACAAGAAGAGTCCTTTTGAGCTCTCAGACGTCTTCTAGTGCCT
CCACATCCAACAGGACTTCAGGGCAGCATAATCCAAGATTAAATTCTACCAGCCATCTCG
GGGAAGCTGTAAAGCAGCTTGCACCAACCA

Homology of Contig U35_8464 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57920.1	1228	0.0	protein\|OsFBX154 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi5g26047.1	805	0.0
Arabidopsis v10	AT3G19180.1	819	2e-127	\| Symbols: ARC6H, PARC6, ATCDP1, CDP1 \| paralog of ARC6 \| chr3:6632810-6636953 FORWARD LENGTH=819