barSeed - Barley Seed Development Database

Probe CUST_31098_PI390587928

Source Contig U35_8466

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31098_PI390587928	Hv_44K_v2	CTGTTGTCAAGAAACTTGTGAGGCTGGATGTTCCTGTGGACAAGTATCCTAATTTCAACT	829	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.599	1.161	1.335	0.741	0.202	0.131
Raw	247.691	271.688	277.921	253.899	24.476	16.790

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9902.1	1680	2e-24	764 - 823	100	60 / 60	plus	ABC15468 ABC16238
JLOC1	JLOC1_6436.1	1899	8e-25	764 - 823	100	60 / 60	plus
Harvest21	ABC18042	889	3e-25	830 - 889	100	60 / 60	plus
Harvest35	U35_8466	889	3e-25	830 - 889	100	60 / 60	plus

Contig Sequence (889 bp)

>U35_8466 889 Hv_44K_v2
CTCTCCCCCCTCTGCGGGTGTGCTGTGGAGGGAAGGGAGGAGGAGCAAGAACCACGAGCT
GCTGCTGCTGCTGCTGCCGCCGCCGCTGCTGCCAACGCTGCACAGCCTGGGCTCGCCGAT
CATTGATTGCGCATCTATTACCTTCCTCTTCTGCGCTACACAAAATCCCATCTATCCCTT
ATATATACTTCCTCCCGGTCCTTGCCAATCCCTCCTCCTCCCTTCTAGATTCCGGGGCCT
CAGGATTGCCCCTCCCTGCCGTAGCTTTGCTAAGTAGTTGTTTCTTCTTCTTGGGTTCCG
TTTCTTGATTGCTTCGGGTCTCCGGTTTTTTGGGTCCTCGGTTTCTTGGTCCTCCTCTCT
CCCCCAAAATCTTGTAGAGTTTGTTCATTTTGCCGTTGGGAGGGAGCCATGGACGACAAC
AGGATTCCGCCGCCGTCTCACCTGCAGCAGTACTCTCAGTCCCCTGTCCATTCTTCGCCT
CACCACCACCACCTCAATTCCATGAGGTACTCTGCCTCGTCCGAGAGAGAAAGGTATCTG
GCTGAGTTGCTTGCTGAGAGGCAGAAGTTAGCCCCATTCGTGCAAGTTCTTCCCTACTGT
ACCAGGCTCTTGAACCAAGAGATTTTGCGGGCATCTTCTTTGTCACCTAACCATAATCTT
GTTGATGCTGAGAGAATCGATCATGGTAGCCCATTAAGGTTACCTGGCCACCCAGTGAAT
GGTCAACCAATGGATCTGGAGGGATGGTCAGGAAGGCAAGCAGAGCATATGGGGGTTCTA
CAAGCCTCACCAATGAGCTGGAATGGTGCTCCAGCACTTGGTGGTACCCCTGTTGTCAAG
AAACTTGTGAGGCTGGATGTTCCTGTGGACAAGTATCCTAATTTCAACT

Homology of Contig U35_8466 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66300.1	291	7e-62	protein\|KH domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g57220.1	289	2e-62
Arabidopsis v10	None