barSeed - Barley Seed Development Database

Probe CUST_31095_PI390587928

Source Contig U35_8469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31095_PI390587928	Hv_44K_v2	GTCAAGTATCTGGAGAAAACATATGAACCAGTCAAGGTTGACGACGTGGTCTATGGTGTT	715	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.353	0.468	1.013	1.381	1.437	1.201
Raw	3.361	7.975	20.132	41.315	15.215	14.566

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377027	3171	2e-24	2143 - 2202	100	60 / 60	plus	ABC10067 ABC10068
MLOC	MLOC_72444.3	915	2e-24	76 - 135	100	60 / 60	plus	ABC10067 ABC10068
MLOC	MLOC_72444.2	1201	2e-24	395 - 454	100	60 / 60	plus	ABC10067 ABC10068
MLOC	MLOC_72444.1	1885	2e-24	865 - 924	100	60 / 60	plus	ABC10067 ABC10068
JLOC1	JLOC1_48181.1	1707	8e-25	629 - 688	100	60 / 60	plus
Harvest21	ABC18087	777	3e-25	716 - 775	100	60 / 60	plus
Harvest35	U35_8469	778	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (778 bp)

>U35_8469 778 Hv_44K_v2
GAAGAAGGGTCCAATTGGCCATGATCAGATGGCAGAGGAACGAGTCGAGGATTTTGGTAT
CCGTGTCAATGATGCTATCATGGAATTTGCCCGTCTGTTCAAGGAGGTTACTGGAAATGA
TTTCGAGCCATGGGAGAGAGAAAAGAAGTTTGAGAAGAAGAGTATGAAGATGTACCCCTT
GGACATGGATGTTGGTTTCGACGTGCGTCATGGAGGTGCGGCACTTCGTCAGCTGGGAGC
TGCAGCAGCACACTGCAAGCTTGACCCTGCCATTTCTTTTCTTCTAAAGCAATTGTGCGG
CCAAGAAATATACAGGTATGCTTTGACAGAGATGGCCCAGGATCTGCCTGACCTTCCTAT
TGGGATGCTTACAGATGTCCATTTGAAGAGAGGTGAGGAAGTGCTACTTGAATGGATCCG
AGATGCGGAACCAGCACCAGAGTCTCGGCTTGCCGCGGATGCATTCTGGATAGAAATAAG
TAACAAGTGGTTCACCCTGTTCCCCACAACTAGGCCGTATATAATGAGGGGATTTGAGCA
GATTGCTGACAATGTGGCCTCTGGTTTTGAGACGATCCGTGATATAAATGATGCTTCTCA
TCTTATCGGAGATGCTTTTGCTTCAACCTTGGATGATCCGCTGTCTGAATGCTATAAGAA
ACTTGGTTGTTCAATCAACAGCGTTCCTGAAGATTCAGAGGATTACAAGATGATCGTCAA
GTATCTGGAGAAAACATATGAACCAGTCAAGGTTGACGACGTGGTCTATGGTGTTTCT

Homology of Contig U35_8469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g32860.1	832	2e-137	protein\|poly synthetase 3, putative, expressed
Brachypodium v1_2	Bradi3g44840.1	825	2e-155
Arabidopsis v10	AT5G22470.1	814	2e-89	NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases \| chr5:7447045-7450743 FORWARD LENGTH=814