barSeed - Barley Seed Development Database

Probe CUST_31094_PI390587928

Source Contig U35_8470

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31094_PI390587928	Hv_44K_v2	GACAGTATTTAAAGATGCGGAGGAAGTTGAAGAGCCTGATGTTACAATTTCTGAAGCTGC	752	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37060.1	3636	2e-24	2131 - 2190	100	60 / 60	plus	ABC16411
JLOC1	JLOC1_23950.2	3643	8e-25	2108 - 2167	100	60 / 60	plus
Harvest21	ABC17577	812	3e-25	753 - 812	100	60 / 60	plus
Harvest35	U35_8470	812	3e-25	753 - 812	100	60 / 60	plus

Contig Sequence (812 bp)

>U35_8470 812 Hv_44K_v2
GCAATTGTTAAAGCCTTACTTGGCCCATATCTTGTTTTCCTATCTTCCACTGTCAACGGG
TATGAAGGGACAGGCCGATCCTTGTCTTTGAAACTCCTCCAGCAGTTAGAATCCCAAAGC
CAGCCATCAGCTTCAAGTGATGGACCAAGTTCCAGCAGGCTGTTTAAAAAGATTGAATTG
AATGAATCCATTAGGTATGCCTCTGGTGACCCTATTGAAACCTGGCTTAATGAGTTACTT
TGTTTGGATCTTGCAAACTCCATTCCAAATATCAGTAGGCTACCTCATCCAGAACACTGC
CAGCTGTATTATGTCAACCGGGACACACTTTTCTCATATCACAAGGAGAGTGAGGTATTT
TTACAGCGGATGATGGCACTTTATGTTGCTTCTCACTACAAAAATTCACCCAATGACTTG
CAATTAATGGCTGATGCACCCGCACATCACCTTTTTGTACTGCTTGGCCCAGTTAATGAG
TCCGAAAACCAGCTCCCGGATATTTTGTGCGTGATTCAGGTTTGCCTGGAAGGACAAATA
TCTCGAAAATCAGCTATCAGAAGCCTAAATGAGGGCCATGCACCTTCCGGTGATCAAATT
CCATGGAAGTTTTGTGAACAATTTCAAGACAATGTATTTCCCAGTCTATCAGGAGCGCGA
ATAGTACGAATCGCTGTTCATCCAAGTGCCCTGAGGCTTGGGTATGGTTCTGCTGCTGTT
AAACTTTTATCAAGTTATTATCAAGGAGAAATGACAGTATTTAAAGATGCGGAGGAAGTT
GAAGAGCCTGATGTTACAATTTCTGAAGCTGC

Homology of Contig U35_8470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07300.2	596	1e-146	protein\|N-acetyltransferase 10, putative, expressed
Brachypodium v1_2	Bradi2g41187.2	875	2e-144
Arabidopsis v10	AT1G10490.1	1028	2e-118	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) \| chr1:3453589-3459925 FORWARD LENGTH=1028