barSeed - Barley Seed Development Database

Probe CUST_31091_PI390587928

Source Contig U35_8473

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31091_PI390587928	Hv_44K_v2	GCAGATACTGTCACAGGAAACTCAGTATCTTCCTATCACAAGAGGGAGCAATGCTGTTCT	876	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57872.2	1139	2e-24	551 - 610	100	60 / 60	plus	None
MLOC	MLOC_57872.1	2152	2e-24	783 - 842	100	60 / 60	plus	ABC18001
JLOC1	JLOC1_37582.1	2259	8e-25	802 - 861	100	60 / 60	plus
Harvest21	ABC18355	939	3e-25	877 - 936	100	60 / 60	plus
Harvest35	U35_8473	939	3e-25	877 - 936	100	60 / 60	plus

Contig Sequence (939 bp)

>U35_8473 939 Hv_44K_v2
CGAAGAAGCAAGCGAAGGAAAAGGCCACAGGAAACCAGGGGCGGCGACTCGCTTCCTAGC
ACTGCTCGCCCCACCCCGCCGGCGATCGCCGGGGCGCGCGCGCGCCGCCGCAGGGAGCCC
CCGCCCCCTCGCCATGGCCCTCCAGGGGAAGAAGCTCGTAAACAACCCCGACGATGTGGT
GACGGAGTTCATCGAGGGGCTGGTGGAAACCTACCCGGGCCTGCAGTACCTGGACGGGTT
CCCTCAGATTAAAGTTGTTCTCCGCGCTGATGCTGTGGGCGGCGCGTTTGACAAGGTTGC
CGTCATCTCGGGTGGTGGAAGTGGCCATGAACCAGCCCATGCGGGATTTGTTGGTCCAGG
AATGTTGACAGCTGCTGTTTCTGGAGATGTTTTTGCTTCTCCACCTGTTGATTCTATTTT
AGCCGCTATTCGAGCTGTAACGGGCACCATGGGATGCCTTCTGATAATAAAGAACTACAC
TGGTGATAGACTTAATTTTGGATTAGCTGCTGAGCAGGCAAAATCTGAAGGCTATAAGAT
AGAGATGGTAATTGTTGGAGATGATTGTGCCCTTCCCCCGCCTCGGGGGATAGCTGGTAG
AAGAGGTTTAGCAGGAACAATTCTTGTGCATAAGGTTGCTGGGGCTGCTGCAGATGCTGG
TTTATCTCTTGCAGATGTTGCTGCAGAAGCAAAACATGCATCTGAGGCTGTTGGTACAAT
GGGAGTAGCACTTTCTGTTTGCACGTTGCCTGGGCAAGTGACATCTGATCGTTTAGGTCC
TGAGCAAATTGAGCTTGGCCTTGGAATTCATGGAGAACCTGGTGCTGCTGTTGTTGAGCT
ACAGACAGTTAATGTGGTGGTCGAACATGTTCTTAAGCAGATACTGTCACAGGAAACTCA
GTATCTTCCTATCACAAGAGGGAGCAATGCTGTTCTCCT

Homology of Contig U35_8473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51000.2	595	6e-147	protein\|3,4-dihydroxy-2-butanone kinase, putative, expressed
Brachypodium v1_2	Bradi1g10550.1	595	7e-153
Arabidopsis v10	AT3G17770.1	595	5e-131	Dihydroxyacetone kinase \| chr3:6081973-6085957 REVERSE LENGTH=595