barSeed - Barley Seed Development Database

Probe CUST_31080_PI390587928

Source Contig U35_8486

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31080_PI390587928	Hv_44K_v2	ACTCTCGACTCTACCTGTGTGGACTCTGGACTAGCGGATCGACGTCGTCTCGTCAACGAT	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55636.1	3234	2e-24	287 - 346	100	60 / 60	plus	ABC45375
JLOC1	JLOC1_35916.1	2374	8e-25	33 - 92	100	60 / 60	plus
Harvest35	U35_8486	693	3e-25	11 - 70	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_8486 693 Hv_44K_v2
AGATTCGTCAACTCTCGACTCTACCTGTGTGGACTCTGGACTAGCGGATCGACGTCGTCT
CGTCAACGATGGCGCCCTCGCACCGCGGCGGCCAGCCCCAGCCCTTCGGCCTCGCGGCGG
CGCCCGAGCTCGACGACGACGGCCGCGTCGCCCGGACGGGGAACCTGTGGACGTGCGTGG
CGCACATCATCACCGGCGTCATCGGGGCCGGCGTGCTCGCGCTCTCATGGAGCGTCGCGC
AGCTCGGCTGGGTGGCCGGCCCCGTCGCCATGGTCTGCTTCGCCGCCGTCACCTACGTCT
CCGCCGTCCTCCTCTCCCACTGCTACCGGTCCCCCGCCCCCGCCGAAGCCGGCGCCGGCG
GCCTGGAAGAGCAGGCGTCGCCGTCGCCGTCGCTGGGCAAGACGCGGCGGAACTACACCT
ACATGGGCGCCGTCCGGGCGCTCCTCGGCAGGAAGCACACCTACGTCTGCGGCTCCCTCC
AGTACCTATACCTCTACGGGATCGGCGTCGCCTACACCATCACCACCGCCACCTGCATCG
GCGCGATCAAGAAGGCCAACTGCTACCACGACCACGGGCGCGGCGCCGCCCGCTGCACCT
CGGACGACCAGGAGCAGCACCTGTTCATGCTGCTCTTCGGGGTCGCGCAGCTGGTGCTCT
NCTTCATCCCCAACTTCCACAGCATGGCGTGGC

Homology of Contig U35_8486 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56470.1	470	5e-84	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi5g24800.1	476	9e-96
Arabidopsis v10	AT5G23810.1	467	4e-53	\| Symbols: AAP7 \| amino acid permease 7 \| chr5:8028461-8030730 FORWARD LENGTH=467