barSeed - Barley Seed Development Database

Probe CUST_31074_PI390587928

Source Contig U35_8492

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31074_PI390587928	Hv_44K_v2	TAAAGAATTTCTCAGTTCCAAAATCTTCATGTCTATATGAATGTTGCTCCGCATGCTTCT	1235	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5049.1	5990	2e-24	1182 - 1241	100	60 / 60	minus	ABC20233
JLOC1	JLOC1_3216.1	5868	8e-25	4758 - 4817	100	60 / 60	plus
Harvest21	ABC16796	1295	3e-25	1236 - 1295	100	60 / 60	plus
Harvest35	U35_8492	1295	3e-25	1236 - 1295	100	60 / 60	plus

Contig Sequence (1295 bp)

>U35_8492 1295 Hv_44K_v2
GCACGAGGCTCAGCCACATCCATCAGCGTCTGATGTGAAAGATAAAGAGGAAGATCCTGA
GAAACTTGTCTCAAGAAATCCTTCTAGTAGAACTATGAAGGGCAATGAATCACTTTCTAT
TATTGCCTTCGGAATCCAGATACTGCAGCACCCGCAGTTCTCTAAACTCTGTTGGGTTAC
CTCAAAACTGCGTGAAGGCCCCTGCACTGATATAAATGGACCATGGAAAGGCTGGCCGTT
TAATTCCTGTTTATTACATGGCAGTAGCTCATCCGATAAATCATTGTCTGAAGGACAGAG
TGTTGTTAAGGGTAAGGAGAAGTTCCTTTGTGTGAGAGGATTGGTTGCTGTTGGTTTATT
AGCATATAGAGGTGTTTATGCATCTGTTATGGAAGTCTGTGCTGAGGTGAGAAAGGTCTT
GGAACTGTTAGTTGAGCAGATCCGAATTAAAATTTTGGAAAAGAAAAGTCGATATCGGTA
CTTCCATATTCTATCTCAAGTAGCATATCTGGATGACATCGTGAACAGCTGGGCATACAC
CTTCCAAAGATTACATCCTGACAGTAGGACAAGAGCATTAGGTACAAAGCCAGCAAGTCT
AGGAAAGTCATGCACAAGAGAGTGTGAAAGTACCAGTTACGCTACAGAAAGCAATGTACT
CTCTGGTCCTGTTGGCGGCTCTACCGAGGTCCAAGACACTTCAGCCCAACAGTCACACGA
CCATCTGGTTGGCCATGCTTCCTGTCCTAGTGAGATGCATGACAAGCCAGTCCAACAAGG
TCCTGACCAACTTAAAATTCATAGTGTGGCCTGCAACATTGGTAATGATCATTTGACATC
TATACCCAGGATTGATGCAGTGGAACATGATCTTGTCTGTTCAGCTTCGCCTGATGCGCA
CAAAGGTACTCTTGCACCTGCAGATTCCGTAATAAACGATGGAGGATCTGGTGGAGTAAA
CAATGGCTGGAAAATGTCCAGAGTAACCAATGGTAAAGAAAAATGCAAGCCAGATATTCA
AAGATCTGAAAGCCTCTCTGAATCTGTTGAAGATTTCAATAATATGCAAAGGGCAGAAAA
TTCAAGTGCATGCCCAGCTACTACGGGCAATGTAGAAGTATCAAAGAAGACAATGTCTTC
TGAATCTCATGGCAGTGGTAATGAGTTGAATACCGGCTTTCCTCTTAATGATGTTCAGTC
AGATCATTCGATTAATGGTCACATGCAAGATAGCATAAAGAATTTCTCAGTTCCAAAATC
TTCATGTCTATATGAATGTTGCTCCGCATGCTTCT

Homology of Contig U35_8492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47800.1	920	5e-153	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi2g46130.1	1823	1e-178
Arabidopsis v10	None