barSeed - Barley Seed Development Database

Probe CUST_31073_PI390587928

Source Contig U35_8493

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31073_PI390587928	Hv_44K_v2	AATCTACTGTGGTAATCGAGTTTGACCTGAAGATTAAGACAGGAGGAGAAGAAGGTGATG	823	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.560	0.741	1.550	2.233	0.885	0.869
Raw	51.725	112.499	198.300	460.250	63.689	68.286

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362430	1746	2e-24	922 - 981	100	60 / 60	plus	ABC18557
Harvest21	ABC17090	886	3e-25	824 - 883	100	60 / 60	plus
Harvest35	U35_8493	886	3e-25	824 - 883	100	60 / 60	plus

Contig Sequence (886 bp)

>U35_8493 886 Hv_44K_v2
GCTCCTGCCCCACCCCGGCGAGCCGCTCTCCTCCCCCACAGGTCAACCAGGCCAGGACCA
CCCAAGCTCCTTCATGCAATGTACCCTGGATGCACCCAGGCAACCAAACACGCCCTAACC
AAAGCCAAAATCCAATCGAAGGGGGAAAGAGCGATGGAGAGCGGCGGCGCTCAAGAGGTT
GTGTCGTCGATGGCTCTGAGGAGCGGAAGGACCTTGGGGGGCGACAACCCGGTCGAAGAG
AAGAGAAGAGGAGTGGGGGGCGGTCGCGCGAAAGCCGTCTCATCGTCGGTAACTCTGCGC
CGGCGCAAGCGCGATGATCCAAACGAAGAGAAAGGAAGTGGGGCTGAGAGAGGCGGAGCA
CAAGCGGTTGTATCGTCGATGGCTCCCCGGAGCATGGTGGCCTTGGGCGCCGACGGGCGT
CCCCTCGACGGCGTCATGCGTGCTGAACTGCTTTGGAAATTGAAGCATGGCGATGGATCC
ATCTACAGAAGCAACGGTTATTGGGCCAAAGTTTACCGTCTCCATGATACCAGCGAGACT
TGTCTGGAGCCAATGATGATGACTGTGCCTGATGACAGTTGCATGCCTAACTGGAGGGTT
TGTGGAAGCCATGCATATTGTGGCATGATGCAGATATTCTCGCTGAAGCTAGCTAACACA
TCATATGTTGGTGACCCAGTTGAGTTGTATGGCTACGTGGCTGTCAGAGATCTGTTGAAC
CCTATGCGCAACTATGTCTTCAACCGTACAAGAGATGATCCTTTCATTGTGGGGCATGAT
GGCCTCATACAATTGTCTGGCCCTAAGAGAGGCATCAGAATGAAATCTACTGTGGTAATC
GAGTTTGACCTGAAGATTAAGACAGGAGGAGAAGAAGGTGATGATC

Homology of Contig U35_8493 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g22090.3	404	1e-61
Arabidopsis v10	None