barSeed - Barley Seed Development Database

Probe CUST_31072_PI390587928

Source Contig U35_8494

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31072_PI390587928	Hv_44K_v2	ACGGTAAAATTTGAATTCAAGACTTTGCGGGAGATATGGAACGACTTCATAGTGAAAAAA	866	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.734	2.345	1.376	0.681	0.373	0.503
Raw	367.944	780.715	402.109	294.417	59.626	86.800

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC16820	931	3e-25	867 - 926	100	60 / 60	plus	ABC16820
Harvest35	U35_8494	931	3e-25	867 - 926	100	60 / 60	plus

Contig Sequence (931 bp)

>U35_8494 931 Hv_44K_v2
AAGATATGGCTGCGACGAACTAAACCCAATAAACGAAATTACCAGGTGGTTATTGCTGTC
GATGATTCACGAAGCATGTCCGAGGGCAAGTGTGGAAAAGTTGCAATCGAAGCATTAGTT
ACAGTTTGTCGGGCCATGTCGCAGCTTGAGGTTGGACAGTTCGCAGTTGCAAGTTTCGGG
AAAAGAGGGAATGTTAAAGTCTTGCATGATTTTGATCAGATCTTCAATGCCGAAGCTGGA
GTCAATATGATCTCTAGTCTTTCCTTTGAGCAAGACAACAAAATTGAGGATCAACCAGTA
GCGGATCTCTTGATGCATCTGAATACAATGCTTGATGCTGCTGTGGCAAGGTCGCGCACG
CCATCAGGGCAAAATCCACTTCAGCAACTCATACTTGTAATATCTGATGGAAAGTTCCAT
GAAAAGGAAAATTTGAGGCGCTGTATCAGGAATGTTCTAAACAGAAGGAGAATGATTGCA
TATGTGCTCCTAGATAGTCATGAGGAATCCATTATGAATTCACTGGAAGCACGCTACGAA
GGAGACAAGCTAATCTTGGGAAAATATATGGACTCATTTCCGTTCCCTTACTATGTTATG
CTGAAGAACATCGAAGCGCTTCCTCGCACACTGGCTGATTTGCTCAGACAGTGGTTCGAG
CTGATGCAGAGCGCGAACGAATGATCTTTGGGGACGTTGCCAGCTTGTCAAACTGCTCAC
GGAACCATGGGTGTTATAGGTTTATACTGGAACAATTAGTGGTCCAAAGTCCGAGTTCTG
TACAAAATATACCACAACTGTTGTAGCTTGTTGTACACTTCAGCACAAATCGTTGTGTAA
AGGTTCCTTTGTACGAAATATGCTACACGGTAAAATTTGAATTCAAGACTTTGCGGGAGA
TATGGAACGACTTCATAGTGAAAAAAAAAAA

Homology of Contig U35_8494 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31856.1	1198	2e-126	protein\|midasin-related, putative, expressed
Brachypodium v1_2	Bradi3g27906.1	901	4e-133
Arabidopsis v10	AT1G67120.1	5393	2e-82	ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding \| chr1:25069727-25095526 REVERSE LENGTH=5393