barSeed - Barley Seed Development Database

Probe CUST_3106_PI390587928

Source Contig U35_6588

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3106_PI390587928	Hv_44K_v2	CGAATTCCTAAACACGTGGACGAGGATGCATATGAATCCGAAGGAATTCCTCTCAGATCT	233	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364236	1815	2e-24	1248 - 1307	100	60 / 60	plus	ABC16501
MLOC	MLOC_15034.1	1541	2e-24	1022 - 1081	100	60 / 60	plus	ABC16501
JLOC1	JLOC1_10291.1	1600	8e-25	1023 - 1082	100	60 / 60	plus
Harvest21	ABC16501	738	3e-25	234 - 293	100	60 / 60	plus	ABC16501
Harvest35	U35_6588	798	3e-25	234 - 293	100	60 / 60	plus

Contig Sequence (798 bp)

>U35_6588 798 Hv_44K_v2
ATCTGAACAAGGCCCTTGACACATTCAATACTGCAGTTGTTTCGCCCATTTATTATACGA
TGTTTACTTCGTTGACCATTTTGGCTAGTGTAATAATGTTCAAGGACTGGGATCGTCAAA
ATCCGACCCAAATTGTCACTGAGATGTGTGGTTTCGTTACTATCCTTTCCGGGACATTTC
TTCTTCACAAGACAAAAGATATGGTGGATGGTCTCCAGCAGAGTCTACCTATCCGAATTC
CTAAACACGTGGACGAGGATGCATATGAATCCGAAGGAATTCCTCTCAGATCTGCTGCTG
ATGGCATTCCTCTCAGGTCACCCAGGGGCACTGAGGGAATTCCTCTCAGGTCTGCCGCTG
ATGGCATTCCGCTCAGGTCATCGAGGGGCACAGAATCTTTCCGCTCGACATCATGACATG
TTGATGGTTGCAGCTGTGCTAAGTCCATGACGCTTGAAGGCAACATTGGTCCAATCATGG
TGCTTCAATGCTTTATACCCGCCATGGCTGTCCCTAAACTTGGGAAGGAAAGAATCTCCA
TTCTTTCATTGGATAGAACTCCTTAGGTTTTGACTGTAGAAGATTGGAAGGTGGCGGCTC
GGCGCCCCATATAATTTCTGAGACTTTGGTACAGAGTTTCGGGGCTTACATCAGTTATAC
TACTATATATACGTCTCTGGGCAAGATAACTAGAATGGCCAAGGACCCAAGTGTGGATTG
ATCCACGGAGGTTATCTGGAACTGTGTATTCTTTCACATACAGTAGTTATTCGTTCAGAA
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_6588 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g35060.1	359	5e-63	protein\|DUF803 domain containing, putative, expressed
Brachypodium v1_2	Bradi2g24880.1	361	5e-65
Arabidopsis v10	None