barSeed - Barley Seed Development Database

Probe CUST_31067_PI390587928

Source Contig U35_3419

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31067_PI390587928	Hv_44K_v2	GTTCAGAAGTTACTACAATTTGCAATTTTATAGAGATTGACAAGTCCTATAAGCTGACGG	497	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375619	1160	2e-24	470 - 529	100	60 / 60	plus	ABC08431
MLOC	MLOC_68963.2	1449	2e-24	521 - 580	100	60 / 60	plus	ABC08431
JLOC1	JLOC1_45675.2	1196	8e-25	626 - 685	100	60 / 60	plus
Harvest21	ABC08432	734	3e-25	498 - 557	100	60 / 60	plus
Harvest35	U35_3419	734	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (734 bp)

>U35_3419 734 Hv_44K_v2
GGCTGCAGGAAAAAACCCTCCGAAAAGAGATTAGGGTTTCTGGTCGGCTAGTTCATACGG
TGAGGAGCACGGGAAGGGAGGCGGAACTCGGGAGATGGGCGCGCCGAAGCAGAAGTGGAC
GTCGGAGGAGGAGGAGGCGCTGCGGCGCGGCGTGCTCAAGCACGGGGCTGGCAAGTGGCG
CACCATCCAGAAGGATCCCGAGTTCAGCCCCGTCCTCTCCTCCCGCTCCAACATCGACCT
CAAGGACAAATGGAGGAATTTGAGTTTCAGTGCAAGTGGACTGGGTTCAAGGGATAAACA
AAGGGTTCCAAGGCCGAAAGCACCTTCGTCCTCCCCATCACCTAGCCCGCAGCTTCTGCT
TCTCCCAGCCCCAAATAGTGTTGCCGATGCTGCTCCACCAGAAGATTCTGAAAAAAGCCC
ACATGATGACAAGACTCCGAGTCCAAAGTACAGTGCCATGATCCTGGAAGCTCTTGGCGA
ACTGAAAGAGCCAAATGGTTCAGAAGTTACTACAATTTGCAATTTTATAGAGATTGACAA
GTCCTATAAGCTGACGGATTCATATGCAAAAAGGGCTCTGGCTCCAATGAAAGATTCATC
TCTCAAGAAGAAGGATCCAGCCAAGTCATCCAAGGCAGCAAAGGGTCTAGCCCTGTTTGC
GGCCGCGAGCCCTGCACTGGACGCAGCTGAAGCTGCAGCGATGAAAGTAGCCGACGCGGA
GGCCAAATCACACC

Homology of Contig U35_3419 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51154.1	307	1e-58	protein\|single myb histone, putative, expressed
Brachypodium v1_2	Bradi2g47820.1	301	4e-76
Arabidopsis v10	None